RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 GOSR2O14653 212 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 SSNA1O43805 119 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 YIF1AO95070 293 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 LY86O95711 162 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 PTTG1O95997 202 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 POLR2GP62487 172 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 RAB11AP62491 216 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 MLANAQ16655 118 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 BEAN1Q3B7T3 259 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 BSXQ3C1V8 233 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 SPANXN5Q5MJ07 72 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 ETFRF1Q6IPR1 90 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 SPSB3Q6PJ21 355 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 HAPLN4Q86UW8 402 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 OR4D5Q8NGN0 318 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 TXN2Q99757 166 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 MARVELD1Q9BSK0 173 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 C20orf24Q9BUV8 137 aa8.74□□□□□ -1.01
LIMCH1-210ENST00000509454 IGHV3OR16-8A0A075B7F1 116 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 H3BP45 60 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 INSL3P51460 131 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 S100A10P60903 97 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 RELQ04864 619 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 DCTN2Q13561 401 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 GPHB5Q86YW7 130 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 RNASEH2CQ8TDP1 164 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 DYNLRB2Q8TF09 96 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 ACY3Q96HD9 319 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 CHRDL1Q9BU40 450 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 FNDC4Q9H6D8 234 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 PALMDQ9NP74 551 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 PSENENQ9NZ42 101 aa8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 ZMAT5Q9UDW3 170 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 LSM5Q9Y4Y9 91 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-210ENST00000509454 SNRPGP15A8MWD9 76 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 L7N2F9 121 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 RND2P52198 227 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 VAMP2P63027 116 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 ID3Q02535 119 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 SLC16A13Q7RTY0 426 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 TMEM170AQ8WVE7 144 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 SLC35E1Q96K37 410 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 C2orf50Q96LR7 162 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 ATP6V0BQ99437 205 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 RCL1Q9Y2P8 373 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 UFC1Q9Y3C8 167 aa8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 STRAPQ9Y3F4 350 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-210ENST00000509454 NOTCH1P46531 2555 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 FBN3Q75N90 2809 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 F8W735 103 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 LGALS9O00182 355 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 ZNF207O43670 478 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 SIX6O95475 246 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 CSN3P07498 182 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 CTSGP08311 255 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 SLC25A4P12235 298 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 ADMP35318 185 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 BCAP31P51572 246 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 ATP5IP56385 69 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 RGS21Q2M5E4 152 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 PVRIGQ6DKI7 326 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 UNQ9165/PRO28630Q6UXU0 137 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 REC114Q7Z4M0 266 aa8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 MRPL36Q9P0J6 103 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-210ENST00000509454 C2orf70A6NJV1 201 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 C15orf62A8K5M9 175 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 NDUFA4O00483 81 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 CLN5O75503 358 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 MBPP02686 304 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 KRTAP10-11P60412 298 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 CD69Q07108 199 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 TIGITQ495A1 244 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 TM4SF20Q53R12 229 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 KPRPQ5T749 579 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 PRSS54Q6PEW0 395 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 OR4X1Q8NH49 305 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 CACNG8Q8WXS5 425 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 NPIPB3Q92617 1050 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 RAB40CQ96S21 281 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 ZNF436Q9C0F3 470 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 SELENOKQ9Y6D0 94 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 TRAV30A0A087WSZ9 112 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 SMCO3A2RU48 225 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 TMEM50AO95807 157 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 FOLR2P14207 255 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 PVALBP20472 110 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 EDN2P20800 178 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 OR10J1P30954 320 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 FCGR2BP31994 310 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 OR8G2PQ6IF36 304 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 IL34Q6ZMJ4 242 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 TMEM190Q8WZ59 177 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 SMIM8Q96KF7 97 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 PRR25Q96S07 402 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 AURKAIP1Q9NWT8 199 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 ALG5Q9Y673 324 aa8.7□□□□□ -1.02
LIMCH1-210ENST00000509454 CMYA5Q8N3K9 4069 aa8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 K7EPK0 472 aa8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 GPX4P36969 197 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-210ENST00000509454 EGFEM1PQ0D2K5 195 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms