RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CDK10Q15131 360 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 PRSS8Q16651 343 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 UTF1Q5T230 341 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 C22orf42Q6IC83 251 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 RBPMS2Q6ZRY4 209 aaKnown RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 CENPSQ8N2Z9 138 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 OR10J5Q8NHC4 309 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 VN1R17PQ8TDU5 208 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 CCDC107Q8WV48 283 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 FRZBQ92765 325 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 EEF1AKMT3Q96AZ1 226 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 GALNT14Q96FL9 552 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 FAM210BQ96KR6 192 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 DERL3Q96Q80 235 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 TSC22D3Q99576 134 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 HSD17B10Q99714 261 aaKnown RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 BCL7BQ9BQE9 202 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 DCSTAMPQ9H295 470 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 SRD5A3Q9H8P0 318 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 Q9N2K0 584 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 DAZ1Q9NQZ3 744 aaKnown RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 SLC2A9Q9NRM0 540 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 ZNF355PQ9NSJ1 428 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 SLC35D1Q9NTN3 355 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 ZNF230Q9UIE0 474 aaPredicted RBP2.84□□□□□ -1.95
USP54-217ENST00000498213 FBXO7Q9Y3I1 522 aa2.84□□□□□ -1.95
USP54-217ENST00000498213 VPS13BQ7Z7G8 4022 aa2.84□□□□□ -1.96
USP54-217ENST00000498213 TRBV6-7A0A0A0MS04 114 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IGHV3-43A0A0B4J1X8 118 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 TRDV1A0A1B0GX56 115 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 A0A1W2PPK0 400 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 METTL21EPA6NDL7 271 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 SLC17A2O00624 439 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 NOL3O60936 208 aaKnown RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 SCGB2A1O75556 95 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IGLV2-23P01705 113 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IGHV3-11P01762 117 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IGKV1-16P04430 117 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IGHV3-43DP0DP04 118 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 CALCBP10092 127 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 DTYMKP23919 212 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 PTBP1P26599 531 aaKnown RBP eCLIP2.83□□□□□ -1.96
USP54-217ENST00000498213 FGF9P31371 208 aaPredicted RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 FCGR2BP31994 310 aaPredicted RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 SDC2P34741 201 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 OR10A3P58181 314 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 DSCR10P59022 87 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 RHOGP84095 191 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 ZNF45Q02386 682 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 MXD1Q05195 221 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 EXOSC2Q13868 293 aaKnown RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 C15orf32Q32M92 178 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 SPAG16Q8N0X2 631 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 GVQW1Q8N7I0 195 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 OR52B4Q8NGK2 314 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 OR10K1Q8NGX5 313 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 OR4S2Q8NH73 311 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 GRPEL2Q8TAA5 225 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 TMEM167AQ8TBQ9 72 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 IL1F10Q8WWZ1 152 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 SRSF12Q8WXF0 261 aaKnown RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 SAT2Q96F10 170 aaPredicted RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 BSCL2Q96G97 398 aaPredicted RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 OR5B12Q96R08 314 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 PHB2Q99623 299 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 TXN2Q99757 166 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 OVOL2Q9BRP0 275 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 NXF2Q9GZY0 626 aaKnown RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 MIXL1Q9H2W2 232 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 FAM212BQ9NTI7 297 aaPredicted RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 COA4Q9NYJ1 87 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 BET1LQ9NYM9 111 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 RDH8Q9NYR8 311 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 CCDC59Q9P031 241 aaKnown RBP2.83□□□□□ -1.96
USP54-217ENST00000498213 CACFD1Q9UGQ2 172 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 AGRNO00468 2067 aa2.83□□□□□ -1.96
USP54-217ENST00000498213 TRAV8-7A0A075B6U6 113 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 FOXI3A8MTJ6 420 aaPredicted RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 J3QRK9 145 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 M0R1X1 148 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 NDUFA4O00483 81 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 FCN1O00602 326 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 CTDSP2O14595 271 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 PDCD5O14737 125 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 FABP7O15540 132 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SMR3BP02814 79 aaPredicted RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 UCHL1P09936 223 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 ZNF735P0CB33 412 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 DUTP33316 252 aaKnown RBP2.82□□□□□ -1.96
USP54-217ENST00000498213 OR3A3P47888 321 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 MFAP4P55083 255 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 PAFAH1B2P68402 229 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 QRFPP83859 136 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 IFITM3Q01628 133 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 GNMTQ14749 295 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 POU2AF1Q16633 256 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 ACSM3Q53FZ2 586 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 HSD17B12Q53GQ0 312 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 RPL39P5Q59GN2 51 aa2.82□□□□□ -1.96
USP54-217ENST00000498213 SOHLH1Q5JUK2 328 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms