RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DNAJC27Q9NZQ0 273 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 COMMD9Q9P000 198 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 NAT8BQ9UHF3 227 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CCL26Q9Y258 94 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SIGLEC7Q9Y286 467 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF443Q9Y2A4 671 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LSM2Q9Y333 95 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 COQ4Q9Y3A0 265 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PLXND1Q9Y4D7 1925 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 LSM5Q9Y4Y9 91 aaKnown RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SHANK1Q9Y566 2161 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 INSIG2Q9Y5U4 225 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 V9GYY9 64 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 SONP18583 2426 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MYH8P13535 1937 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PTPRDP23468 1912 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 A0A087WUU8 490 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 IGHV2-26A0A0B4J1V2 119 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 LOC107984640A0A0U1RRK4 108 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KIR2DS1A0A191URI9 304 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KBTBD11-OT1A0A1B0GTJ5 212 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TINCRA0A1B0GVN0 87 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TRDV1A0A1B0GX56 115 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C7orf71A4D174 169 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FAM231BA6NCW3 169 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NAP1L6A6NFF2 107 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZFP92A6NM28 416 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ANKRD30BLA7E2S9 258 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FAM166BA8MTA8 275 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FTCDNL1E5RQL4 147 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 K7EP34 96 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 M0R1X1 148 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TNFRSF11BO00300 401 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NBR2O15453 112 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 GSTZ1O43708 216 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NUPR1O60356 82 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR1I1O60431 355 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FCN3O75636 299 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SOX14O95416 240 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SFT2D2O95562 160 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF682O95780 498 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CYB5AP00167 134 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SOD1P00441 154 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 HRASP01112 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KRASP01116 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MT-ATP8P03928 68 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 IFNW1P05000 195 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ISG15P05161 165 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 P0C879 139 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF728P0DKX0 622 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A6P0DMU7 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A5P0DMU8 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A10P0DMU9 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A7P0DMV0 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PSG2P11465 335 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CTSEP14091 401 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CELP19835 753 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NTSP30990 170 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PRDX2P32119 198 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CTRLP40313 264 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR1E2P47887 323 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 P2RY1P47900 373 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 REG1BP48304 166 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 GNG4P50150 75 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FABP6P51161 128 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 DAP3P51398 398 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 P2RX1P51575 399 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ATP1B3P54709 279 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 EMP1P54849 157 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TCTAP57738 103 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MTPNP58546 118 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TPPP2P59282 170 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 GNG5P63218 68 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SLC35A1P78382 337 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ATP5G2Q06055 141 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MEF2CQ06413 473 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 RAB40BQ12829 278 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FOXF1Q12946 379 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PSG7Q13046 419 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C1DQ13901 141 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KIR2DS1Q14954 304 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PAFAH1B3Q15102 231 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CD226Q15762 336 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZIC1Q15915 447 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SYPL1Q16563 259 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MPV17LQ2QL34 196 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TRMT12Q53H54 448 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A1Q5HYN5 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR10J3Q5JRS4 329 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PAGE3Q5JUK9 113 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 UBE2NLQ5JXB2 153 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C9orf129Q5T035 196 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C1orf220Q5T0J3 134 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM78Q5T7P6 136 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM215Q68D42 235 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR2T5Q6IEZ7 315 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 LEG1Q6P5S2 330 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF880Q6PDB4 577 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 AGTRAPQ6RW13 159 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 LCN15Q6UWW0 184 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms