RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 A0A0B4J2A0 478 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 CORTO00230 105 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 YIF1AO95070 293 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 SULT1A3P0DMM9 295 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 SULT1A4P0DMN0 295 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 BAK1Q16611 211 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 DEDD2Q8WXF8 326 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 HEYLQ9NQ87 328 aaPredicted RBP15.82■□□□□ 0.12
LIME1-207ENST00000489212 SHPKQ9UHJ6 478 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 SMPXQ9UHP9 88 aa15.82■□□□□ 0.12
LIME1-207ENST00000489212 IGHV3-49A0A0A0MS15 119 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 IGHV7-4-1A0A0J9YVY3 117 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 CEBPZOSA8MTT3 80 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 TSPAN4O14817 238 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 TMEM50AO95807 157 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 HTR2BP41595 481 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 TOMM20LQ6UXN7 152 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 LGI3Q8N145 548 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 TMEM170AQ8WVE7 144 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 SDHCQ99643 169 aaPredicted RBP15.81■□□□□ 0.12
LIME1-207ENST00000489212 SPATA25Q9BR10 227 aa15.81■□□□□ 0.12
LIME1-207ENST00000489212 CHEK1O14757 476 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 ANXA3P12429 323 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 OPRK1P41145 380 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 ANKRD55Q3KP44 614 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 C2orf83Q53S99 150 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 TMEM128Q5BJH2 165 aa15.8■□□□□ 0.12
LIME1-207ENST00000489212 SPAG8Q99932 426 aaPredicted RBP15.8■□□□□ 0.12
LIME1-207ENST00000489212 SLC25A21Q9BQT8 299 aaPredicted RBP15.8■□□□□ 0.12
LIME1-207ENST00000489212 CCR6P51684 374 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 SRPXP78539 464 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 SMCO1Q147U7 214 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 LAMTOR1Q6IAA8 161 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 TMEM116Q8NCL8 245 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 SLC24A4Q8NFF2 622 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 OR4X1Q8NH49 305 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 CITED4Q96RK1 184 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 RNF2Q99496 336 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 RHPN1-AS1Q9BWJ2 59 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 ZFAND3Q9H8U3 227 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 RETNQ9HD89 108 aa15.79■□□□□ 0.12
LIME1-207ENST00000489212 IGHV3OR16-13A0A075B7E8 117 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 TRAV14DV4A0A0A6YYC5 116 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 IGHV3-74A0A0B4J1X5 117 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 A0A1B0GU03 582 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 CLN5O75503 358 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 TNFRSF9Q07011 255 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 ZNF600Q6ZNG1 722 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 HIPK2Q9H2X6 1198 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 HSPB7Q9UBY9 170 aa15.78■□□□□ 0.12
LIME1-207ENST00000489212 PUS1Q9Y606 427 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIME1-207ENST00000489212 VAMP1P23763 118 aa15.77■□□□□ 0.12
LIME1-207ENST00000489212 PPP1R1AQ13522 171 aa15.77■□□□□ 0.12
LIME1-207ENST00000489212 RBKSQ9H477 322 aa15.77■□□□□ 0.12
LIME1-207ENST00000489212 UBQLN2Q9UHD9 624 aa15.77■□□□□ 0.12
LIME1-207ENST00000489212 SFT2D2O95562 160 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 IGKV1-17P01599 117 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 APOHP02749 345 aaPredicted RBP15.76■□□□□ 0.11
LIME1-207ENST00000489212 TRIQKQ629K1 86 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 PRSS54Q6PEW0 395 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 LRTM2Q8N967 370 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 RNASEH2CQ8TDP1 164 aaKnown RBP15.76■□□□□ 0.11
LIME1-207ENST00000489212 EDA2RQ9HAV5 297 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 NDUFA13Q9P0J0 144 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 CACFD1Q9UGQ2 172 aa15.76■□□□□ 0.11
LIME1-207ENST00000489212 CSMD3Q7Z407 3707 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 DUXBA0A1W2PPF3 345 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 PITX3O75364 302 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 NPY1RP25929 384 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 RBMS2Q15434 407 aaKnown RBP15.75■□□□□ 0.11
LIME1-207ENST00000489212 ODF3L2Q3SX64 289 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 TIGITQ495A1 244 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 FAM90A2PQ658T7 463 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 CENPSQ8N2Z9 138 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 LILRB2Q8N423 598 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 MUC7Q8TAX7 377 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 DTD1Q8TEA8 209 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 ST8SIA2Q92186 375 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 GINS3Q9BRX5 216 aa15.75■□□□□ 0.11
LIME1-207ENST00000489212 LINC00854A0A1B0GVQ3 168 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 RPS10-NUDT3A0A1W2PQS6 291 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 INPP1P49441 399 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 RND2P52198 227 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 OR1S1Q8NH92 325 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 FAM110AQ9BQ89 295 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 VSIRQ9H7M9 311 aa15.74■□□□□ 0.11
LIME1-207ENST00000489212 STARD9Q9P2P6 4700 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 DYNC2H1Q8NCM8 4307 aaKnown RBP15.73■□□□□ 0.11
LIME1-207ENST00000489212 IGHV3-66A0A0C4DH42 116 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 NAP1L6A6NFF2 107 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 C3orf84H3BNL1 204 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 BTCP35070 178 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 FLVCR2Q9UPI3 526 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 U3KQ87 197 aa15.73■□□□□ 0.11
LIME1-207ENST00000489212 RYR3Q15413 4870 aa15.72■□□□□ 0.11
LIME1-207ENST00000489212 IGKV3-7A0A075B6H7 116 aa15.72■□□□□ 0.11
LIME1-207ENST00000489212 OR4C46A6NHA9 309 aa15.72■□□□□ 0.11
LIME1-207ENST00000489212 NDUFB6O95139 128 aa15.72■□□□□ 0.11
LIME1-207ENST00000489212 IFNA10P01566 189 aa15.72■□□□□ 0.11
LIME1-207ENST00000489212 IGLC1P0CG04 106 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms