RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CTSGP08311 255 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 NPY1RP25929 384 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 CD69Q07108 199 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 ASAH1Q13510 395 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 C2orf83Q53S99 150 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 PVRIGQ6DKI7 326 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 LCN12Q6JVE5 192 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 MZT2BQ6NZ67 158 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 TMEM190Q8WZ59 177 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 TXN2Q99757 166 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 C20orf24Q9BUV8 137 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 FNDC4Q9H6D8 234 aaPredicted RBP11.19□□□□□ -0.62
USP4-212ENST00000486549 UFC1Q9Y3C8 167 aa11.19□□□□□ -0.62
USP4-212ENST00000486549 NDUFA4O00483 81 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 ZNF207O43670 478 aaKnown RBP11.18□□□□□ -0.62
USP4-212ENST00000486549 PITX3O75364 302 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 IAPPP10997 89 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 SLC25A6P12236 298 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 CBLN1P23435 193 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 FCGR2BP31994 310 aaPredicted RBP11.18□□□□□ -0.62
USP4-212ENST00000486549 NPBWR1P48145 328 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 RELQ04864 619 aaPredicted RBP11.18□□□□□ -0.62
USP4-212ENST00000486549 MLANAQ16655 118 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 CD300EQ496F6 205 aaPredicted RBP11.18□□□□□ -0.62
USP4-212ENST00000486549 UXS1Q8NBZ7 420 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 B9D2Q9BPU9 175 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 MAGT1Q9H0U3 335 aa11.18□□□□□ -0.62
USP4-212ENST00000486549 MRPL36Q9P0J6 103 aaKnown RBP11.18□□□□□ -0.62
USP4-212ENST00000486549 MPTX1A8MV57 137 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 YIF1AO95070 293 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 IFNA21P01568 189 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 H2AFB2P0C5Z0 115 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 ENKURQ8TC29 256 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 TMEM170AQ8WVE7 144 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 SEC22CQ9BRL7 303 aa11.17□□□□□ -0.62
USP4-212ENST00000486549 LSM4Q9Y4Z0 139 aaKnown RBP11.17□□□□□ -0.62
USP4-212ENST00000486549 RPS10-NUDT3A0A1W2PQS6 291 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 FAM90A26D6RGX4 464 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 NHLRC4P0CG21 123 aaPredicted RBP11.16□□□□□ -0.62
USP4-212ENST00000486549 ELLP55199 621 aaPredicted RBP11.16□□□□□ -0.62
USP4-212ENST00000486549 IFITM3Q01628 133 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 GUCA2BQ16661 112 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 DEFB114Q30KQ6 69 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 BTNL8Q6UX41 500 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 NOXA1Q86UR1 476 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 OR2K2Q8NGT1 345 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 RNASEH2CQ8TDP1 164 aaKnown RBP11.16□□□□□ -0.62
USP4-212ENST00000486549 TECRQ9NZ01 308 aaKnown RBP11.16□□□□□ -0.62
USP4-212ENST00000486549 MLXQ9UH92 298 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 PAIP2BQ9ULR5 123 aaKnown RBP11.16□□□□□ -0.62
USP4-212ENST00000486549 U3KQ87 197 aa11.16□□□□□ -0.62
USP4-212ENST00000486549 WRBO00258 174 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 CLN5O75503 358 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 MED6O75586 246 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 TMEM50AO95807 157 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 IFNA4P05014 189 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 RND2P52198 227 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 OR4X1Q8NH49 305 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 MITD1Q8WV92 249 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 MARC2Q969Z3 335 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 WDR89Q96FK6 387 aaPredicted RBP11.15□□□□□ -0.62
USP4-212ENST00000486549 ZNF414Q96IQ9 312 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 DAZ1Q9NQZ3 744 aaKnown RBP11.15□□□□□ -0.62
USP4-212ENST00000486549 MRPL27Q9P0M9 148 aaKnown RBP11.15□□□□□ -0.62
USP4-212ENST00000486549 SMAD5-AS1Q9Y6J3 95 aa11.15□□□□□ -0.62
USP4-212ENST00000486549 CCSO14618 274 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 SYNGR2O43760 224 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 SCGB2A1O75556 95 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 SCGB1D2O95969 90 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 ETFRF1Q6IPR1 90 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 PRSS54Q6PEW0 395 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 SLC16A13Q7RTY0 426 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 TMEM61Q8N0U2 210 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 ZNF431Q8TF32 576 aaPredicted RBP11.14□□□□□ -0.63
USP4-212ENST00000486549 ACY3Q96HD9 319 aa11.14□□□□□ -0.63
USP4-212ENST00000486549 IGHV3-49A0A0A0MS15 119 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 C15orf62A8K5M9 175 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 SCAF4O95104 1147 aaKnown RBP11.13□□□□□ -0.63
USP4-212ENST00000486549 C8orf88P0DMB2 117 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 SLC25A4P12235 298 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 NKX2-1P43699 371 aaPredicted RBP11.13□□□□□ -0.63
USP4-212ENST00000486549 IAH1Q2TAA2 248 aaPredicted RBP11.13□□□□□ -0.63
USP4-212ENST00000486549 TIGITQ495A1 244 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 TOMM20LQ6UXN7 152 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 ZNF600Q6ZNG1 722 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 GTSCR1Q86UQ5 136 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 OR10C1Q96KK4 312 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 CIB3Q96Q77 187 aaPredicted RBP11.13□□□□□ -0.63
USP4-212ENST00000486549 GSKIPQ9P0R6 139 aa11.13□□□□□ -0.63
USP4-212ENST00000486549 PUS1Q9Y606 427 aaKnown RBP eCLIP11.13□□□□□ -0.63
USP4-212ENST00000486549 IGHV3OR16-13A0A075B7E8 117 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 IGHV3-74A0A0B4J1X5 117 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 ZNF785A8K8V0 405 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 FAM25EA8MYX2 175 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 H3BP45 60 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 K7EMT4 169 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 SSSCA1O60232 199 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 DEFA1P59665 94 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 DEFA3P59666 94 aa11.12□□□□□ -0.63
USP4-212ENST00000486549 CD81P60033 236 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms