RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 RSPO1Q2MKA7 263 aaPredicted RBP9.14□□□□□ -0.95
HDAC6-228ENST00000486227 EBLN2Q6P2I7 272 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 EAF1Q96JC9 268 aaPredicted RBP9.14□□□□□ -0.95
HDAC6-228ENST00000486227 NRN1Q9NPD7 142 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 PGPA6NDG6 321 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 CRYBB3P26998 211 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 COLCA1Q6ZS62 124 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 KCNS1Q96KK3 526 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 H3BTX0 84 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 J3KRW8 73 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 MLNRO43193 412 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 CENPWQ5EE01 88 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 FAM90A2PQ658T7 463 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 RPRMLQ8N4K4 120 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 AGMATQ9BSE5 352 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 PRDM13Q9H4Q3 707 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 ANAPC10Q9UM13 185 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 CENPFP49454 3210 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 IGHV3-35A0A0C4DH35 117 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 J3QKU1 62 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 SLC17A3O00476 420 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 CD55P08174 381 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 ACTL10Q5JWF8 245 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 ZFP30Q9Y2G7 519 aa9.14□□□□□ -0.95
HDAC6-228ENST00000486227 TMSB15BA0A087X1C1 80 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 RRHO14718 337 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 MOSP00540 346 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 RPL30P62888 115 aaKnown RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 CD177Q8N6Q3 437 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 PEF1Q9UBV8 284 aaKnown RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 SPG11Q96JI7 2443 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 TRAV30A0A087WSZ9 112 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 DUTP33316 252 aaKnown RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 TCF23Q7RTU1 214 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 OR4X2Q8NGF9 303 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 C1orf147Q96MC9 270 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 VSIRQ9H7M9 311 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 RFNGQ9Y644 331 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 IGKV3-15P01624 115 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 ORM1P02763 201 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 MAS1LP35410 378 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 PRNTQ86SH4 94 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 TMEM70Q9BUB7 260 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 OBSL1O75147 1896 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 IL6RP08887 468 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 FCGR2BP31994 310 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 ZNF672Q499Z4 452 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-228ENST00000486227 IGFL3Q6UXB1 125 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 NIT1Q86X76 327 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 NPFFR1Q9GZQ6 430 aa9.13□□□□□ -0.95
HDAC6-228ENST00000486227 SCO2A0A1W2PP80 73 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 HLA-DRB1P01911 266 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 TDGF1P13385 188 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 IGFBP2P18065 325 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 ZNF137PP52743 207 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 PLP1P60201 277 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 SRSF7Q16629 238 aaKnown RBP eCLIP9.12□□□□□ -0.951e-6■■■□□ 17.2
HDAC6-228ENST00000486227 NMSQ5H8A3 153 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 Q6P435 159 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 ASCL4Q6XD76 172 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 C5orf17Q8NAS9 161 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 SAA1P0DJI8 122 aaPredicted RBP9.12□□□□□ -0.95
HDAC6-228ENST00000486227 FOXL1Q12952 345 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 NUP37Q8NFH4 326 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 SGK494Q96LW2 274 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 SNHG12Q9BXW3 62 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 IFI27L2Q9H2X8 130 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 ZNF503-AS2A6NEH8 195 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 ATP5IP56385 69 aaPredicted RBP9.12□□□□□ -0.95
HDAC6-228ENST00000486227 TM4SF20Q53R12 229 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 LYPD6BQ8NI32 183 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 GATAD1Q8WUU5 269 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 EEF1AKMT3Q96AZ1 226 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 C16orf92Q96LL3 132 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.12□□□□□ -0.95
HDAC6-228ENST00000486227 PRR30Q53SZ7 412 aaPredicted RBP9.12□□□□□ -0.95
HDAC6-228ENST00000486227 PMCHL2Q9BQD1 86 aa9.12□□□□□ -0.95
HDAC6-228ENST00000486227 OR2J3O76001 311 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 IGKV1D-33P01593 117 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 IGKV1-33P01594 117 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 TRGV3P03979 118 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 FBLN7Q53RD9 439 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 OR8A1Q8NGG7 326 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 C19orf24Q9BVV8 132 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 S4R3C0 116 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 OTOGLQ3ZCN5 2332 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 NOTCH3Q9UM47 2321 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 CIDEAO60543 219 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 FABP2P12104 132 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 GATA2P23769 480 aaPredicted RBP9.11□□□□□ -0.95
HDAC6-228ENST00000486227 SP5Q6BEB4 398 aaPredicted RBP9.11□□□□□ -0.95
HDAC6-228ENST00000486227 A0A0G2JLM5 398 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 RELQ04864 619 aaPredicted RBP9.11□□□□□ -0.95
HDAC6-228ENST00000486227 DGAT2L7PQ6IED9 249 aa9.11□□□□□ -0.95
HDAC6-228ENST00000486227 NUDT3O95989 172 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 OR9G9P0C7N8 305 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 IL15RAQ13261 267 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 TMEM256Q8N2U0 113 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 COQ2Q96H96 371 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 TMEM133Q9H2Q1 129 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms