RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 P2RX4Q99571 388 aa13.25□□□□□ -0.29
VIM-205ENST00000485947 HSPB9Q9BQS6 159 aa13.25□□□□□ -0.29
VIM-205ENST00000485947 LINC00527Q9UJ94 153 aa13.25□□□□□ -0.29
VIM-205ENST00000485947 BOLA1Q9Y3E2 137 aa13.25□□□□□ -0.29
VIM-205ENST00000485947 PSMB8P28062 276 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 EIF5AP63241 154 aaKnown RBP13.24□□□□□ -0.29
VIM-205ENST00000485947 ZNF266Q14584 549 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 ETV3LQ6ZN32 361 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 KLHL30-AS1Q8NEE0 82 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 OR5C1Q8NGR4 320 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 DPF1Q92782 380 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 RYR3Q15413 4870 aa13.24□□□□□ -0.29
VIM-205ENST00000485947 BORCS7-ASMTA0A0B4J1R7 106 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 NPIPB5A8MRT5 1133 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 CORTO00230 105 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 IFNA4P05014 189 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 CRYGCP07315 174 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 AREGP15514 252 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 CTRB1P17538 263 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 SLC38A11Q08AI6 406 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 PVRIGQ6DKI7 326 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 CTRB2Q6GPI1 263 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 OR8G2PQ6IF36 304 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 HAPLN4Q86UW8 402 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 LILRB2Q8N423 598 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 TTC9CQ8N5M4 171 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 TMEM217Q8N7C4 229 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 OR1P1Q8NH06 330 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 RNASEH2CQ8TDP1 164 aaKnown RBP13.23□□□□□ -0.29
VIM-205ENST00000485947 TMEM170AQ8WVE7 144 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 ATP5SQ99766 215 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 GGACTQ9BVM4 153 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 PARP11Q9NR21 331 aa13.23□□□□□ -0.29
VIM-205ENST00000485947 F11RQ9Y624 299 aaKnown RBP13.23□□□□□ -0.29
VIM-205ENST00000485947 PRSS46E5RG02 174 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 ATP6V0E1O15342 81 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 CYB5BO43169 146 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 JTBO76095 146 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 RPLP1P05386 114 aaKnown RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 EGR2P11161 476 aaPredicted RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 PPIFP30405 207 aaKnown RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 DLK1P80370 383 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 EGFEM1PQ0D2K5 195 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 C8orf86Q6ZUL3 223 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 STOML3Q8TAV4 291 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 MYOZ3Q8TDC0 251 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 C4orf3Q8WVX3 66 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 BSCL2Q96G97 398 aaPredicted RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 UBE2E2Q96LR5 201 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 FAM103A1Q9BTL3 118 aaKnown RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 ZNF471Q9BX82 626 aaPredicted RBP13.22□□□□□ -0.29
VIM-205ENST00000485947 SMIM3Q9BZL3 60 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 CYTL1Q9NRR1 136 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 FBXO7Q9Y3I1 522 aa13.22□□□□□ -0.29
VIM-205ENST00000485947 FNDC10F2Z333 226 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 CCL24O00175 119 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 ARL16Q0P5N6 197 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 CLINT1Q14677 625 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 AKIRIN2Q53H80 203 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 ASPHD1Q5U4P2 390 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 UBAC2Q8NBM4 344 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 TMEM147Q9BVK8 224 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 PARD6GQ9BYG4 376 aaPredicted RBP13.21□□□□□ -0.29
VIM-205ENST00000485947 SLA2Q9H6Q3 261 aa13.21□□□□□ -0.29
VIM-205ENST00000485947 AURKAIP1Q9NWT8 199 aaPredicted RBP13.21□□□□□ -0.29
VIM-205ENST00000485947 TRAV41A0A0B4J266 112 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 IFNA5P01569 189 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 IGLV1-40P01703 118 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 REG1AP05451 166 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 TPT1P13693 172 aaKnown RBP13.2□□□□□ -0.3
VIM-205ENST00000485947 RUNX1Q01196 453 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 EXOSC2Q13868 293 aaKnown RBP13.2□□□□□ -0.3
VIM-205ENST00000485947 VWC2Q2TAL6 325 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 UNQ5815/PRO19632Q6UWF5 114 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 LFNGQ8NES3 379 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 MRAPQ8TCY5 172 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 WFDC1Q9HC57 220 aa13.2□□□□□ -0.3
VIM-205ENST00000485947 RPS10-NUDT3A0A1W2PQS6 291 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 APELAP0DMC3 54 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 GPX4P36969 197 aaPredicted RBP13.19□□□□□ -0.3
VIM-205ENST00000485947 CD69Q07108 199 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 KLK9Q2XQG4 91 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 RPL7L1Q6DKI1 246 aaKnown RBP13.19□□□□□ -0.3
VIM-205ENST00000485947 ETFRF1Q6IPR1 90 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 CACNG8Q8WXS5 425 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 RAX2Q96IS3 184 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 UQCC1Q9NVA1 299 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 KLK9Q9UKQ9 250 aa13.19□□□□□ -0.3
VIM-205ENST00000485947 DEFA4P12838 97 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 HIST1H1BP16401 226 aaKnown RBP13.18□□□□□ -0.3
VIM-205ENST00000485947 FHL3Q13643 280 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 ECSCRQ19T08 205 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 C19orf54Q5BKX5 351 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 BAP18Q8IXM2 172 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 ST8SIA2Q92186 375 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 PHYHIPLQ96FC7 376 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 ARV1Q9H2C2 271 aa13.18□□□□□ -0.3
VIM-205ENST00000485947 RAB9AP51151 201 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 MFAP2P55001 183 aa13.17□□□□□ -0.3
VIM-205ENST00000485947 SLC25A24Q6NUK1 477 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms