RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 TRIQKQ629K1 86 aa12.42□□□□□ -0.42
VAMP4-204ENST00000482519 LAMTOR1Q6IAA8 161 aa12.42□□□□□ -0.42
VAMP4-204ENST00000482519 TMEM116Q8NCL8 245 aa12.42□□□□□ -0.42
VAMP4-204ENST00000482519 TM2D3Q9BRN9 247 aa12.42□□□□□ -0.42
VAMP4-204ENST00000482519 IGHV3OR16-13A0A075B7E8 117 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 IGHV3-74A0A0B4J1X5 117 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 A0A0B4J2A0 478 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SRPXP78539 464 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SMCO1Q147U7 214 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 TMEM128Q5BJH2 165 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SLC25A21Q9BQT8 299 aaPredicted RBP12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SPATA25Q9BR10 227 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 HIPK2Q9H2X6 1198 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SHPKQ9UHJ6 478 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 SMPXQ9UHP9 88 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 NBEAL2Q6ZNJ1 2754 aa12.41□□□□□ -0.42
VAMP4-204ENST00000482519 TRAV14DV4A0A0A6YYC5 116 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 IGHV7-4-1A0A0J9YVY3 117 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 RBMY1BA6NDE4 496 aaKnown RBP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 RBMY1EA6NEQ0 496 aaKnown RBP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 TMEM50AO95807 157 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 RBMY1DP0C7P1 496 aaKnown RBP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 CCR6P51684 374 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 BAK1Q16611 211 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 BSXQ3C1V8 233 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 PVRIGQ6DKI7 326 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 TOMM20LQ6UXN7 152 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 SLC24A4Q8NFF2 622 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 OR1S1Q8NH92 325 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 DEDD2Q8WXF8 326 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 ZNF414Q96IQ9 312 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 RHPN1-AS1Q9BWJ2 59 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 FNDC4Q9H6D8 234 aaPredicted RBP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 NDUFA13Q9P0J0 144 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 MRPL36Q9P0J6 103 aaKnown RBP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 UBQLN2Q9UHD9 624 aa12.4□□□□□ -0.42
VAMP4-204ENST00000482519 PUS1Q9Y606 427 aaKnown RBP eCLIP12.4□□□□□ -0.42
VAMP4-204ENST00000482519 TNFRSF9Q07011 255 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 NMSQ5H8A3 153 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 OR10C1Q96KK4 312 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 RNF2Q99496 336 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 SPAG8Q99932 426 aaPredicted RBP12.39□□□□□ -0.43
VAMP4-204ENST00000482519 GINS3Q9BRX5 216 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 CACFD1Q9UGQ2 172 aa12.39□□□□□ -0.43
VAMP4-204ENST00000482519 IGKV3-7A0A075B6H7 116 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 RPS10-NUDT3A0A1W2PQS6 291 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 CHEK1O14757 476 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 TSPAN4O14817 238 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 CLN5O75503 358 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 SCGB2A1O75556 95 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 IFNA10P01566 189 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 PPP1R1AQ13522 171 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 C2orf83Q53S99 150 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 ZNF600Q6ZNG1 722 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 CENPSQ8N2Z9 138 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 OR4X1Q8NH49 305 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 RBKSQ9H477 322 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 RETNQ9HD89 108 aa12.38□□□□□ -0.43
VAMP4-204ENST00000482519 PIGBOS1A0A0B4J2F0 54 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 IGHV3-66A0A0C4DH42 116 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 A0A1B0GU03 582 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 SFT2D2O95562 160 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 NPY1RP25929 384 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 TFPI2P48307 235 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 RBMS2Q15434 407 aaKnown RBP12.37□□□□□ -0.43
VAMP4-204ENST00000482519 TIGITQ495A1 244 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 LINC00322Q6ZN03 302 aaPredicted RBP12.37□□□□□ -0.43
VAMP4-204ENST00000482519 RNASEH2CQ8TDP1 164 aaKnown RBP12.37□□□□□ -0.43
VAMP4-204ENST00000482519 DTD1Q8TEA8 209 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 HSPB7Q9UBY9 170 aa12.37□□□□□ -0.43
VAMP4-204ENST00000482519 NAP1L6A6NFF2 107 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 OR4C46A6NHA9 309 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 CENPXA8MT69 81 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 RND2P52198 227 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 NOXA1Q86UR1 476 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 GBGT1Q8N5D6 347 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 TMEM170AQ8WVE7 144 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 ST8SIA2Q92186 375 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 SDHCQ99643 169 aaPredicted RBP12.36□□□□□ -0.43
VAMP4-204ENST00000482519 FAM110AQ9BQ89 295 aa12.36□□□□□ -0.43
VAMP4-204ENST00000482519 DUXBA0A1W2PPF3 345 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 APOHP02749 345 aaPredicted RBP12.35□□□□□ -0.43
VAMP4-204ENST00000482519 HOXB5P09067 269 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 BMI1P35226 326 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 RPL11P62913 178 aaKnown RBP12.35□□□□□ -0.43
VAMP4-204ENST00000482519 ETFRF1Q6IPR1 90 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 PRSS54Q6PEW0 395 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 ACY3Q96HD9 319 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 ZFAND3Q9H8U3 227 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 FLVCR2Q9UPI3 526 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 U3KQ87 197 aa12.35□□□□□ -0.43
VAMP4-204ENST00000482519 TRAV30A0A087WSZ9 112 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 LOC102724200A0A096LPH7 203 aaPredicted RBP12.34□□□□□ -0.43
VAMP4-204ENST00000482519 NDUFB6O95139 128 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 IFNA4P05014 189 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 SLC25A4P12235 298 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 IL7P13232 177 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 NPPCP23582 126 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 TCF24Q7RTU0 167 aa12.34□□□□□ -0.43
VAMP4-204ENST00000482519 WFDC3Q8IUB2 231 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms