RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 BTNL8Q6UX41 500 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 UNQ9165/PRO28630Q6UXU0 137 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 LINC00322Q6ZN03 302 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM61Q8N0U2 210 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 DEFB125Q8N687 156 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 UXS1Q8NBZ7 420 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 OR1P1Q8NH06 330 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 OR52I2Q8NH67 350 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 OR4A16Q8NH70 328 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 MRGPRFQ96AM1 343 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 ISOC1Q96CN7 298 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 SEC22AQ96IW7 307 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 SRD5A3Q9H8P0 318 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 DAZ1Q9NQZ3 744 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 GAR1Q9NY12 217 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 C21orf62Q9NYP8 219 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 MRPL27Q9P0M9 148 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 MTFP1Q9UDX5 166 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 MLXQ9UH92 298 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 CEPT1Q9Y6K0 416 aa5.1□□□□□ -1.59
CCDC88A-213ENST00000476903 NBEAL2Q6ZNJ1 2754 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 TRAV25A0A0B4J276 109 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 OR11H12B2RN74 326 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 GABARAPH6UMI1 98 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 K7EIM0 57 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 NDUFA4O00483 81 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 ATG12O94817 140 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 IGKV1-39P01597 117 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 CD74P04233 296 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 IGKV1D-39P04432 117 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 C8orf88P0DMB2 117 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 ALDH3B2P48448 385 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 PPP5CP53041 499 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 MFAP2P55001 183 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 VAMP2P63027 116 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 MRPS10P82664 201 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 PRCDQ00LT1 54 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 SSBP1Q04837 148 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 ZNF674Q2M3X9 581 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 Q56UQ5 140 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 RBPMS2Q6ZRY4 209 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 LHFPL1Q86WI0 220 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 CCDC71LQ8N9Z2 235 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM229BQ8NBD8 167 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 UBAC2Q8NBM4 344 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 OR52B4Q8NGK2 314 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 TERB2Q8NHR7 220 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 ZFAND1Q8TCF1 268 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 TMEM190Q8WZ59 177 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 ABHD1Q96SE0 405 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 WFDC10AQ9H1F0 79 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 COPZ2Q9P299 210 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 SELENOKQ9Y6D0 94 aa5.09□□□□□ -1.59
CCDC88A-213ENST00000476903 DNAH7Q8WXX0 4024 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 IGHV3-21A0A0B4J1V1 117 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 C3orf85A0A1B0GTC6 90 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RBMY1BA6NDE4 496 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RBMY1EA6NEQ0 496 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 C15orf62A8K5M9 175 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 NUPL2O15504 423 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 CIDEAO60543 219 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RAB3DO95716 219 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RBMY1DP0C7P1 496 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 AKR1C2P52895 323 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 MFAP4P55083 255 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 HSPE1P61604 102 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 ERHP84090 104 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 MEF2DQ14814 521 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 SPCS2Q15005 226 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 TRIM16LQ309B1 348 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 SCGB2B2Q4G0G5 96 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 AARDQ4LEZ3 155 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 STEAP1BQ6NZ63 245 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 ZNF600Q6ZNG1 722 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 CLVS1Q8IUQ0 354 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 SLC35G3Q8N808 338 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 ZNF114Q8NC26 417 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 OR4D10Q8NGI6 311 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 OR13C8Q8NGS7 320 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RAB2BQ8WUD1 216 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 PPP1R14BQ96C90 147 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 TP53RKQ96S44 253 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 NEU1Q99519 415 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 SPAG8Q99932 426 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 BCL7BQ9BQE9 202 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 PDCD10Q9BUL8 212 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 C20orf24Q9BUV8 137 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 MIXL1Q9H2W2 232 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 HIPK2Q9H2X6 1198 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 C5orf66Q9H5L9 145 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 EDA2RQ9HAV5 297 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RETNQ9HD89 108 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 CCDC59Q9P031 241 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 CBY1Q9Y3M2 126 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 RYR3Q15413 4870 aa5.08□□□□□ -1.6
CCDC88A-213ENST00000476903 DISC1C4P0D8 188 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 HSBP1L1C9JCN9 74 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 I3L2K1 104 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 K7EMT4 169 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 CTDSP2O14595 271 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms