RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MRPL36Q9P0J6 103 aaKnown RBP13.39□□□□□ -0.27
UPF3A-203ENST00000474056 SMPXQ9UHP9 88 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 KCNIP3Q9Y2W7 256 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 IGHV3-49A0A0A0MS15 119 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 IGHV7-4-1A0A0J9YVY3 117 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 ZNF701M0R085 212 aaPredicted RBP13.38□□□□□ -0.27
UPF3A-203ENST00000474056 NXPH3O95157 252 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 FAUP35544 74 aaKnown RBP13.38□□□□□ -0.27
UPF3A-203ENST00000474056 OPRK1P41145 380 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 MLANAQ16655 118 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 LAMTOR1Q6IAA8 161 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 IL22RA2Q969J5 263 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 RNF2Q99496 336 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 FAM110AQ9BQ89 295 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 UBQLN2Q9UHD9 624 aa13.38□□□□□ -0.27
UPF3A-203ENST00000474056 NBEAL2Q6ZNJ1 2754 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 CHEK1O14757 476 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 TMEM50AO95807 157 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 AP3S2P59780 193 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 CASC10Q5T4H9 136 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 TOMM20LQ6UXN7 152 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 TMEM116Q8NCL8 245 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 RHPN1-AS1Q9BWJ2 59 aa13.37□□□□□ -0.27
UPF3A-203ENST00000474056 CSMD3Q7Z407 3707 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 IGHV3OR16-13A0A075B7E8 117 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 IGHV3-74A0A0B4J1X5 117 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 CEBPZOSA8MTT3 80 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 SULT1A3P0DMM9 295 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 SULT1A4P0DMN0 295 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 HTR2BP41595 481 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 ZNF600Q6ZNG1 722 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 LYZL2Q7Z4W2 148 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 ZFAND3Q9H8U3 227 aa13.36□□□□□ -0.27
UPF3A-203ENST00000474056 HEYLQ9NQ87 328 aaPredicted RBP13.36□□□□□ -0.27
UPF3A-203ENST00000474056 PUS1Q9Y606 427 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF3A-203ENST00000474056 TRAV14DV4A0A0A6YYC5 116 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 A0A0B4J2A0 478 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 CLN5O75503 358 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 ODF3L2Q3SX64 289 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 C2orf83Q53S99 150 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 NMSQ5H8A3 153 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 TMED4Q7Z7H5 227 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 GINS3Q9BRX5 216 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 SRRQ9GZT4 340 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 SHPKQ9UHJ6 478 aa13.35□□□□□ -0.27
UPF3A-203ENST00000474056 DYNC2H1Q8NCM8 4307 aaKnown RBP13.34□□□□□ -0.27
UPF3A-203ENST00000474056 LOC102724200A0A096LPH7 203 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-203ENST00000474056 A0A1B0GU03 582 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 ANXA3P12429 323 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 LGI3Q8N145 548 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 SLC24A4Q8NFF2 622 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 OR4X1Q8NH49 305 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 TMEM170AQ8WVE7 144 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 GGTLC1Q9BX51 225 aa13.34□□□□□ -0.27
UPF3A-203ENST00000474056 IGKV3-7A0A075B6H7 116 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 OR4C46A6NHA9 309 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 APOHP02749 345 aaPredicted RBP13.33□□□□□ -0.28
UPF3A-203ENST00000474056 LYL1P12980 280 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 CCR6P51684 374 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 SMCO1Q147U7 214 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 SPANXN2Q5MJ10 180 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 DEDD2Q8WXF8 326 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 ST8SIA2Q92186 375 aa13.33□□□□□ -0.28
UPF3A-203ENST00000474056 RPS10-NUDT3A0A1W2PQS6 291 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 TFPI2P48307 235 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 SRPXP78539 464 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 TNFRSF9Q07011 255 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 TMEM128Q5BJH2 165 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 FAM90A2PQ658T7 463 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 ZFAND6Q6FIF0 208 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 VSIRQ9H7M9 311 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 HSPB7Q9UBY9 170 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 SACSQ9NZJ4 4579 aa13.32□□□□□ -0.28
UPF3A-203ENST00000474056 IGHV3-66A0A0C4DH42 116 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 IGKV1-17P01599 117 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 NPY1RP25929 384 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 RND2P52198 227 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 BAK1Q16611 211 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 TIGITQ495A1 244 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 PRSS54Q6PEW0 395 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 TCF24Q7RTU0 167 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 LILRB2Q8N423 598 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 DTD1Q8TEA8 209 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 SLC25A21Q9BQT8 299 aaPredicted RBP13.31□□□□□ -0.28
UPF3A-203ENST00000474056 RBKSQ9H477 322 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 RYR2Q92736 4967 aa13.31□□□□□ -0.28
UPF3A-203ENST00000474056 VAMP1P23763 118 aa13.3□□□□□ -0.28
UPF3A-203ENST00000474056 GBGT1Q8N5D6 347 aa13.3□□□□□ -0.28
UPF3A-203ENST00000474056 RNASEH2CQ8TDP1 164 aaKnown RBP13.3□□□□□ -0.28
UPF3A-203ENST00000474056 CACFD1Q9UGQ2 172 aa13.3□□□□□ -0.28
UPF3A-203ENST00000474056 AGRNO00468 2067 aa13.3□□□□□ -0.28
UPF3A-203ENST00000474056 TRAV30A0A087WSZ9 112 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 DUXBA0A1W2PPF3 345 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 SCGB2A1O75556 95 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 DFFBO76075 338 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 IFNA10P01566 189 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 IGLC1P0CG04 106 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 SLC25A4P12235 298 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 BMI1P35226 326 aa13.29□□□□□ -0.28
UPF3A-203ENST00000474056 PPP1R1AQ13522 171 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms