RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 AMELYQ99218 206 aa7.53□□□□□ -1.2
COL6A3-210ENST00000473258 TRAV40A0A0B4J280 105 aa7.53□□□□□ -1.2
COL6A3-210ENST00000473258 PDLIM4P50479 330 aa7.53□□□□□ -1.2
COL6A3-210ENST00000473258 IFI27L2Q9H2X8 130 aa7.53□□□□□ -1.2
COL6A3-210ENST00000473258 SPHKAPQ2M3C7 1700 aa7.53□□□□□ -1.2
COL6A3-210ENST00000473258 DPTQ07507 201 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 F2Z2F3 143 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 IGHG2P01859 326 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 FXYD7P58549 80 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 EGR4Q05215 589 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 FAM78AQ5JUQ0 283 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 JPT2Q9H910 190 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 PRR33A8MZF0 331 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 PAX4O43316 350 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 ATP6V0E2Q8NHE4 81 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 TMEM158Q8WZ71 300 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 LINC00615Q96LM1 132 aaPredicted RBP7.52□□□□□ -1.21
COL6A3-210ENST00000473258 IGLL5B9A064 214 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 K7ESM1 405 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 LEPROTO15243 131 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 CD28P10747 220 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 LINC00158P58513 81 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 DEPPQ9NTK1 212 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 PROCRQ9UNN8 238 aa7.52□□□□□ -1.21
COL6A3-210ENST00000473258 RPP25LQ8N5L8 163 aaKnown RBP7.51□□□□□ -1.21
COL6A3-210ENST00000473258 FDCSPQ8NFU4 85 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 CFHR5Q9BXR6 569 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 IQGAP1P46940 1657 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 TRAV12-1A0A0B4J245 112 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 SCN1AP35498 2009 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 CXCL5P42830 114 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 HERVK_113P63121 156 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 LRRC75A-AS1Q8N1F1 130 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 MED12Q93074 2177 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 KISS1RQ969F8 398 aaPredicted RBP7.51□□□□□ -1.21
COL6A3-210ENST00000473258 LIPT2A6NK58 231 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 TNFRSF4P43489 277 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 WDR83OSQ9Y284 106 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 BGLAPP02818 100 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 COX6A1P12074 109 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 CD27P26842 260 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 ACP7Q6ZNF0 438 aa7.51□□□□□ -1.21
COL6A3-210ENST00000473258 CHD3Q12873 2000 aaKnown RBP7.51□□□□□ -1.21
COL6A3-210ENST00000473258 NDUFC2-KCTD14E9PQ53 114 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 EFEMP2O95967 443 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 ZNF646O15015 1829 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 ANKRD26Q9UPS8 1709 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 A0A0B4J2C4 111 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 TMEM229AB2RXF0 380 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 WNT9BO14905 357 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 ZFP36L2P47974 494 aaKnown RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 RPL34P49207 117 aaKnown RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 EFNB3Q15768 340 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 TMEM219Q86XT9 240 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 FAM110AQ9BQ89 295 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 RPUSD1Q9UJJ7 312 aaKnown RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 IGKV1D-42A0A075B6H8 117 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 CENPVL1A0A0U1RR11 272 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 CENPVL3A0A0U1RRI6 287 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 SPINK2P20155 84 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 C8orf31Q8N9H6 132 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 WFDC11Q8NEX6 87 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 OSR1Q8TAX0 266 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 TM4SF19Q96DZ7 209 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 A0A1W2PR77 199 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 PRR7Q8TB68 274 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 FGF22Q9HCT0 170 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 LINC00527Q9UJ94 153 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 ZC3H13Q5T200 1668 aaKnown RBP7.5□□□□□ -1.21
COL6A3-210ENST00000473258 PBRM1Q86U86 1689 aa7.5□□□□□ -1.21
COL6A3-210ENST00000473258 PSMB8P28062 276 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 NMSQ5H8A3 153 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 SUMO4Q6EEV6 95 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 RTTNQ86VV8 2226 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 F6UB75 175 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 SPSB3Q6PJ21 355 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 DLL3Q9NYJ7 618 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 FBLN5Q9UBX5 448 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 JPT1Q9UK76 154 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 REG1BP48304 166 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 PRR31Q5SQ13 230 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 BAALCQ8WXS3 180 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 SLC25A39Q9BZJ4 359 aaPredicted RBP7.49□□□□□ -1.21
COL6A3-210ENST00000473258 TRAV17A0A0B4J275 112 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 MT-ATP8P03928 68 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 GCSAMQ8N6F7 178 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 SPTBN1Q01082 2364 aaKnown RBP7.49□□□□□ -1.21
COL6A3-210ENST00000473258 NUP205Q92621 2012 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 FAM236DA0A1B0GTK5 79 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 IGHV3-48P01763 117 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 FAM236CP0DP71 79 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 SLC25A16P16260 332 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 WFDC9Q8NEX5 89 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 GLMPQ8WWB7 406 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 ANAPC10Q9UM13 185 aa7.49□□□□□ -1.21
COL6A3-210ENST00000473258 YPEL1O60688 119 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 CCL7P80098 99 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 FAM90A1Q86YD7 464 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 ZNF721Q8TF20 911 aa7.48□□□□□ -1.21
COL6A3-210ENST00000473258 YPEL2Q96QA6 119 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms