RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SELENOHQ8IZQ5 122 aaKnown RBP11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 GBGT1Q8N5D6 347 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 OR51S1Q8NGJ8 323 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 RBPMSQ93062 196 aaKnown RBP11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 PRRT1Q99946 306 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 RABL2AQ9UBK7 228 aaPredicted RBP11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 CACNG5Q9UF02 275 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 RABL2BQ9UNT1 228 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 GPR132Q9UNW8 380 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 PUS1Q9Y606 427 aaKnown RBP eCLIP11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 IGHV3-66A0A0C4DH42 116 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 ANKRD20A5PA0PJZ0 165 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 H3BMQ9 156 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM50AO95807 157 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 SPCS3P61009 180 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 DHODHQ02127 395 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 ZNF124Q15973 351 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 MLANAQ16655 118 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM268Q5VZI3 342 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 PVRIGQ6DKI7 326 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 TCF24Q7RTU0 167 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 ST8SIA2Q92186 375 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 SLIRPQ9GZT3 109 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 FNDC4Q9H6D8 234 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 ZFAND3Q9H8U3 227 aa11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 MRPL36Q9P0J6 103 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 RSL24D1Q9UHA3 163 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-205ENST00000472524 SPRY2O43597 315 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 GSTZ1O43708 216 aaPredicted RBP11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 NXPH3O95157 252 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 APOHP02749 345 aaPredicted RBP11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 BMI1P35226 326 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 RPL5P46777 297 aaKnown RBP11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 FAM90A2PQ658T7 463 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 WFDC3Q8IUB2 231 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 STPG3Q8N7X2 389 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 GPR146Q96CH1 333 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 GALNT14Q96FL9 552 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 MCUBQ9NWR8 336 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 PRR13Q9NZ81 148 aa11.63□□□□□ -0.55
CCDC88B-205ENST00000472524 A0A0J9YWU9 116 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 A0A1B0GU03 582 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 FABP12A6NFH5 140 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 CEBPZOSA8MTT3 80 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 UBE2CO00762 179 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 CLN5O75503 358 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 TNFSF8P32971 234 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 BSXQ3C1V8 233 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 Q6ZWC4 215 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 OR52E5Q8NH55 327 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 MCFD2Q8NI22 146 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 MAP6D1Q9H9H5 199 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 HEYLQ9NQ87 328 aaPredicted RBP11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 SCP2D1Q9UJQ7 156 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 TP53TG1Q9Y2A0 90 aa11.62□□□□□ -0.55
CCDC88B-205ENST00000472524 KIR2DL5BA0A0G2JN68 375 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 KIR2DL5BA0A0G2JPC4 375 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 HTR2BP41595 481 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 RPL11P62913 178 aaKnown RBP11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 PAFAH1B2P68402 229 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 AARDQ4LEZ3 155 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 KIR2DL5AQ8N109 375 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 LILRB2Q8N423 598 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 OR4X1Q8NH49 305 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 KIR2DL5BQ8NHK3 375 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM230Q96A57 120 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 VSIRQ9H7M9 311 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 KCNIP3Q9Y2W7 256 aa11.61□□□□□ -0.55
CCDC88B-205ENST00000472524 RPS10-NUDT3A0A1W2PQS6 291 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 DNASE2O00115 360 aaPredicted RBP11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 SCGB2A1O75556 95 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 DFFBO76075 338 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 AKR1C4P17516 323 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 CMC4P56277 68 aaPredicted RBP11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 PMS2P11Q13670 270 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM187Q14656 261 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 TIGITQ495A1 244 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 LYG2Q86SG7 212 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 SLC24A4Q8NFF2 622 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 SCGB3A2Q96PL1 93 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 MS4A6AQ9H2W1 248 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM231Q9H6L2 316 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 TMEM56-RWDD3S4R434 201 aa11.6□□□□□ -0.55
CCDC88B-205ENST00000472524 CCDC160A6NGH7 325 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 CD5P06127 495 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 SULT1A3P0DMM9 295 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 SULT1A4P0DMN0 295 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 NPPCP23582 126 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 EWSR1Q01844 656 aaKnown RBP eCLIP11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 RNF183Q96D59 192 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 METTL26Q96S19 204 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 SOSTQ9BQB4 213 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 RABAC1Q9UI14 185 aa11.59□□□□□ -0.55
CCDC88B-205ENST00000472524 A0A1W2PS18 150 aa11.58□□□□□ -0.56
CCDC88B-205ENST00000472524 CXorf65A6NEN9 183 aa11.58□□□□□ -0.56
CCDC88B-205ENST00000472524 IGKV1-17P01599 117 aa11.58□□□□□ -0.56
CCDC88B-205ENST00000472524 RND2P52198 227 aa11.58□□□□□ -0.56
CCDC88B-205ENST00000472524 C2orf83Q53S99 150 aa11.58□□□□□ -0.56
CCDC88B-205ENST00000472524 IL22RA2Q969J5 263 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms