RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RER1O15258 196 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 SOCS1O15524 211 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 NAPSAO96009 420 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 LTAP01374 205 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 IGLV2-8P01709 118 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 INAFM2P0DMQ5 153 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 FABP2P12104 132 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 NMUP48645 174 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 NUDT2P50583 147 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF80P51504 273 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF83P51522 516 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 PEA15Q15121 130 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 IQCJQ1A5X6 159 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 COA6Q5JTJ3 125 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 Q6AWC8 147 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 REG3GQ6UW15 175 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 Q6ZRP5 223 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 H2AFVQ71UI9 128 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 AAED1Q7RTV5 226 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 MDP1Q86V88 176 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 TMEM252Q8N6L7 170 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF555Q8NEP9 628 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ATXN7L3BQ96GX2 97 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 PRAC1Q96KF2 57 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 S100A13Q99584 98 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 VAMP8Q9BV40 100 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 PARLQ9H300 379 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 C16orf95Q9H693 158 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 PLEKHF2Q9H8W4 249 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF492Q9P255 531 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 TP73-AS1Q9UF72 201 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 ADAMTS12P58397 1594 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 FRMPD1Q5SYB0 1578 aa3.49□□□□□ -1.85
CCDC88A-210ENST00000468534 DAPK1P53355 1430 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ADAMTS13Q76LX8 1427 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 TRAV13-1A0A0B4J241 112 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 OR2T8A6NH00 312 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF705GA8MUZ8 300 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 A8MWV9 139 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 G3V3Q6 166 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 PDCD5O14737 125 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 EDF1O60869 148 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 CST7O76096 145 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 APOC3P02656 99 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF705DP0CH99 300 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 PYYP10082 97 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 LGALS3P17931 250 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 CRYBB3P26998 211 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 MRPL54Q6P161 138 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 MORN3Q6PF18 240 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 IZUMO2Q6UXV1 221 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ATOH7Q8N100 152 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 KCNRGQ8N5I3 272 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 RAB2BQ8WUD1 216 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 H1FXQ92522 213 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 FAM104AQ969W3 186 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 TBL1YQ9BQ87 522 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 CLEC7AQ9BXN2 247 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 OCR1Q9BZK8 76 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ATG5Q9H1Y0 275 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 DPM3Q9P2X0 92 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 KLK13Q9UKR3 277 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 CHCHD2Q9Y6H1 151 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 MYH11P35749 1972 aa3.48□□□□□ -1.85
CCDC88A-210ENST00000468534 ANKRD26Q9UPS8 1709 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNFX1Q9P2E3 1918 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 TRGV10A0A0A0MS01 117 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 IGKV6D-21A0A0A0MT36 114 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ODAMA1E959 279 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF860A6NHJ4 632 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 PEX7O00628 323 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 GEMIN2O14893 280 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 HLA-DPB1P04440 258 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 SRP19P09132 144 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 CHTF8P0CG12 524 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 GNB2P62879 340 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 CYCSP99999 105 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF90Q03938 601 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 EGFEM1PQ0D2K5 195 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ORMDL2Q53FV1 153 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ADAMTSL4-AS1Q5T5F5 129 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 Q6ZUT4 128 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 PHF5AQ7RTV0 110 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 GPHB5Q86YW7 130 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 HIST3H2BBQ8N257 126 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 RNF182Q8N6D2 247 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 OR5AK2Q8NH90 309 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 PSMF1Q92530 271 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 LINC00526Q96FQ7 95 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 HYLS1Q96M11 299 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 PARP12Q9H0J9 701 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 SMCO4Q9NRQ5 59 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 MOB4Q9Y3A3 225 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 NOP16Q9Y3C1 178 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 LINC00312Q9Y6C7 94 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 SIGLEC1Q9BZZ2 1709 aa3.47□□□□□ -1.85
CCDC88A-210ENST00000468534 ADGBQ8N7X0 1667 aa3.46□□□□□ -1.85
CCDC88A-210ENST00000468534 RGS12O14924 1447 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 LMTK2Q8IWU2 1503 aa3.46□□□□□ -1.86
CCDC88A-210ENST00000468534 IGHV4-30-2A0A087WSY4 118 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms