RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 EIF5AL1Q6IS14 154 aaKnown RBP4.31□□□□□ -1.72
VPS41-211ENST00000466017 TEX261Q6UWH6 196 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 ZNF767PQ75MW2 155 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 BAP18Q8IXM2 172 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 SLC24A4Q8NFF2 622 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 OR1S2Q8NGQ3 325 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 OR1P1Q8NH06 330 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 LRRC20Q8TCA0 184 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 TMEM170AQ8WVE7 144 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 SSMEM1Q8WWF3 244 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 ZNF48Q96MX3 618 aaPredicted RBP4.31□□□□□ -1.72
VPS41-211ENST00000466017 OR4C12Q96R67 309 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 ATP6V0BQ99437 205 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 GINS3Q9BRX5 216 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 SLC25A33Q9BSK2 321 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 NPVFQ9HCQ7 196 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 F11RQ9Y624 299 aaKnown RBP4.31□□□□□ -1.72
VPS41-211ENST00000466017 PDZD2O15018 2839 aa4.31□□□□□ -1.72
VPS41-211ENST00000466017 NBPF19A0A087WUL8 3843 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 UTP20O75691 2785 aaKnown RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 IGHV3OR16-10A0A075B7F0 116 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 BTBD17A6NE02 478 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 H3BUX3 64 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 CYB5BO43169 146 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TRIAP1O43715 76 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 CNIH1O95406 144 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 IFNA7P01567 189 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 METTL15P1P0C7V9 234 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TPT1P13693 172 aaKnown RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 CD99P14209 185 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 MYOD1P15172 320 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 HIST1H1BP16401 226 aaKnown RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 CD24P25063 80 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 FCGR2BP31994 310 aaPredicted RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 HOXA1P49639 335 aaPredicted RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 SERF2P84101 59 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 WT1-ASQ06250 92 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 ARL16Q0P5N6 197 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 ETFRF1Q6IPR1 90 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TMEM144Q7Z5S9 345 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 HAPLN4Q86UW8 402 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 Q8N2B8 174 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 ZNF680Q8NEM1 530 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 OR5C1Q8NGR4 320 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 FAM110DQ8TAY7 271 aaPredicted RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 ARPC1AQ92747 370 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 P2RX4Q99571 388 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 ATP5SQ99766 215 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 PSMG3Q9BT73 122 aaPredicted RBP4.3□□□□□ -1.72
VPS41-211ENST00000466017 TMEM147Q9BVK8 224 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 WFDC1Q9HC57 220 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 YAE1D1Q9NRH1 226 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 FBXL17Q9UF56 701 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 VPREB3Q9UKI3 123 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TIMM9Q9Y5J7 89 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 CELSR2Q9HCU4 2923 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 PLXNB1O43157 2135 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TENM4Q6N022 2769 aa4.3□□□□□ -1.72
VPS41-211ENST00000466017 TRBV9A0A0B4J1U6 114 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 RPS10-NUDT3A0A1W2PQS6 291 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 TMEM89A2RUT3 159 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 CST7O76096 145 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 NXPH3O95157 252 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 LY6G6DO95868 133 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 IFNA5P01569 189 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OPN1MWP04001 364 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 IFNA4P05014 189 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OPN1MW2P0DN77 364 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OPN1MW3P0DN78 364 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OR13C7P0DN81 318 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 SPP1P10451 314 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 PAX6P26367 422 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 SRP14P37108 136 aaKnown RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 RAB5CP51148 216 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 SLC38A11Q08AI6 406 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 ASPHD1Q5U4P2 390 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 CRYBG3Q68DQ2 2970 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 RPL7L1Q6DKI1 246 aaKnown RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 TMEM116Q8NCL8 245 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OR10W1Q8NGF6 305 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 OR2G3Q8NGZ4 309 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 SCARB1Q8WTV0 552 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 RBMXL1Q96E39 390 aaKnown RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 GNPNAT1Q96EK6 184 aaPredicted RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 BSCL2Q96G97 398 aaPredicted RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 TXN2Q99757 166 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 HINT2Q9BX68 163 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 ZNF471Q9BX82 626 aaPredicted RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 WDR61Q9GZS3 305 aaKnown RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 ZC4H2Q9NQZ6 224 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 SERTAD4Q9NUC0 356 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 UQCC1Q9NVA1 299 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 THYN1Q9P016 225 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 WDR83OSQ9Y284 106 aa4.29□□□□□ -1.72
VPS41-211ENST00000466017 LSM4Q9Y4Z0 139 aaKnown RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 SOX21Q9Y651 276 aaPredicted RBP4.29□□□□□ -1.72
VPS41-211ENST00000466017 IGLV11-55A0A075B6I3 123 aa4.28□□□□□ -1.72
VPS41-211ENST00000466017 TRAV30A0A087WSZ9 112 aa4.28□□□□□ -1.72
VPS41-211ENST00000466017 UMAD1C9J7I0 102 aa4.28□□□□□ -1.72
VPS41-211ENST00000466017 H3BP45 60 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms