RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ELOVL1Q9BW60 279 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 MAGT1Q9H0U3 335 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 GAR1Q9NY12 217 aaKnown RBP13.52□□□□□ -0.25
COL7A1-205ENST00000465238 GSKIPQ9P0R6 139 aa13.52□□□□□ -0.25
COL7A1-205ENST00000465238 OR2T8A6NH00 312 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 FAM25EA8MYX2 175 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 SYNGR2O43760 224 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 NPY1RP25929 384 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 NKX2-1P43699 371 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-205ENST00000465238 ATP5IP56385 69 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-205ENST00000465238 OR10C1Q96KK4 312 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 CIB3Q96Q77 187 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-205ENST00000465238 TXN2Q99757 166 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 ZC4H2Q9NQZ6 224 aa13.51□□□□□ -0.25
COL7A1-205ENST00000465238 C5orf51A6NDU8 294 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 SNRPGP15A8MWD9 76 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 C3orf84H3BNL1 204 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 WRBO00258 174 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 CCSO14618 274 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 TGOLN2O43493 480 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 PTTG1O95997 202 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 IGHV3-48P01763 117 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 IAPPP10997 89 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 SPNP16150 400 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 OPRK1P41145 380 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 ID3Q02535 119 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 FAM106AQ4KMX7 169 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 ACSM6Q6P461 480 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 SPSB3Q6PJ21 355 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 ZBTB8BQ8NAP8 495 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-205ENST00000465238 OR4D5Q8NGN0 318 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 RNASEH2CQ8TDP1 164 aaKnown RBP13.5□□□□□ -0.25
COL7A1-205ENST00000465238 BSCL2Q96G97 398 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-205ENST00000465238 OR4C12Q96R67 309 aa13.5□□□□□ -0.25
COL7A1-205ENST00000465238 RPS10-NUDT3A0A1W2PQS6 291 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 SCGB1D2O95969 90 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 NPBWR1P48145 328 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 RPP30P78346 268 aaKnown RBP13.49□□□□□ -0.25
COL7A1-205ENST00000465238 GSG1LQ6UXU4 331 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 GPHB5Q86YW7 130 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 OR9G4Q8NGQ1 327 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 PEMTQ9UBM1 199 aa13.49□□□□□ -0.25
COL7A1-205ENST00000465238 HUWE1Q7Z6Z7 4374 aaKnown RBP13.48□□□□□ -0.25
COL7A1-205ENST00000465238 ZNF320A2RRD8 509 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 NUPL2O15504 423 aaKnown RBP13.48□□□□□ -0.25
COL7A1-205ENST00000465238 GNG7O60262 68 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 IFNA4P05014 189 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 FCGR2BP31994 310 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-205ENST00000465238 POLR2GP62487 172 aaKnown RBP eCLIP13.48□□□□□ -0.25
COL7A1-205ENST00000465238 RAB11AP62491 216 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 ETFRF1Q6IPR1 90 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 TMEM170AQ8WVE7 144 aa13.48□□□□□ -0.25
COL7A1-205ENST00000465238 PAIP2BQ9ULR5 123 aaKnown RBP13.48□□□□□ -0.25
COL7A1-205ENST00000465238 F8W735 103 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-205ENST00000465238 GP9P14770 177 aa13.47□□□□□ -0.25
COL7A1-205ENST00000465238 MLANAQ16655 118 aa13.47□□□□□ -0.25
COL7A1-205ENST00000465238 SBSPONQ8IVN8 264 aa13.47□□□□□ -0.25
COL7A1-205ENST00000465238 C2orf50Q96LR7 162 aa13.47□□□□□ -0.25
COL7A1-205ENST00000465238 CHRDL1Q9BU40 450 aa13.47□□□□□ -0.25
COL7A1-205ENST00000465238 FNDC4Q9H6D8 234 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-205ENST00000465238 IGHV3-35A0A0C4DH35 117 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 LGALS9O00182 355 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 SCGB2A1O75556 95 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 CTSGP08311 255 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 SLC25A4P12235 298 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 RCHY1Q96PM5 261 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 DNAH7Q8WXX0 4024 aa13.46□□□□□ -0.25
COL7A1-205ENST00000465238 SSNA1O43805 119 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 SSSCA1O60232 199 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 FRMD6-AS1P0C7T7 363 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 RELQ04864 619 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-205ENST00000465238 SPANXN5Q5MJ07 72 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 OR4X1Q8NH49 305 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 RAB40CQ96S21 281 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 PSENENQ9NZ42 101 aa13.45□□□□□ -0.26
COL7A1-205ENST00000465238 STRAPQ9Y3F4 350 aaKnown RBP13.45□□□□□ -0.26
COL7A1-205ENST00000465238 C15orf62A8K5M9 175 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 GOSR2O14653 212 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 CLN5O75503 358 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 TMEM50AO95807 157 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 MBPP02686 304 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-205ENST00000465238 CSN3P07498 182 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 ADMP35318 185 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 RGS21Q2M5E4 152 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 SMIM8Q96KF7 97 aa13.44□□□□□ -0.26
COL7A1-205ENST00000465238 ZNF436Q9C0F3 470 aaPredicted RBP13.44□□□□□ -0.26
COL7A1-205ENST00000465238 TRAV30A0A087WSZ9 112 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 H3BP45 60 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 NDUFA4O00483 81 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 GPX4P36969 197 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-205ENST00000465238 PRSS54Q6PEW0 395 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 IL34Q6ZMJ4 242 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 SLC16A13Q7RTY0 426 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 MUC7Q8TAX7 377 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 ZMAT4Q9H898 229 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 MRPL36Q9P0J6 103 aaKnown RBP13.43□□□□□ -0.26
COL7A1-205ENST00000465238 UFC1Q9Y3C8 167 aa13.43□□□□□ -0.26
COL7A1-205ENST00000465238 LSM5Q9Y4Y9 91 aaKnown RBP13.43□□□□□ -0.26
COL7A1-205ENST00000465238 C2orf70A6NJV1 201 aa13.42□□□□□ -0.26
COL7A1-205ENST00000465238 L7N2F9 121 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 201.1 ms