RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 TMEM230Q96A57 120 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 ST6GAL2Q96JF0 529 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 CGREF1Q99674 301 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 APOL4Q9BPW4 351 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 EBF4Q9BQW3 602 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 TSSK6Q9BXA6 273 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 MRPL32Q9BYC8 188 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 COMMD5Q9GZQ3 224 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 OR2D2Q9H210 308 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 CMC2Q9NRP2 79 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 RPRMQ9NS64 109 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SDHAF2Q9NX18 166 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 PPP1R14DQ9NXH3 145 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 H2AFY2Q9P0M6 372 aaPredicted RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 MRPS7Q9Y2R9 242 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 PRELID3BQ9Y3B1 194 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 F11RQ9Y624 299 aaKnown RBP1.52□□□□□ -2.17
USP40-211ENST00000464956 ENPP4Q9Y6X5 453 aa1.52□□□□□ -2.17
USP40-211ENST00000464956 SPRR5A0A1B0GTR4 108 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 A0A1B0GU03 582 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 A0A1W2PPK0 400 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 A8MTW9 85 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 PRR32B1ATL7 298 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 H0Y9J4 135 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 BOLA2-SMG1P6H3BVE0 249 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 GABRPO00591 440 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 GSTZ1O43708 216 aaPredicted RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 ITM2AO43736 263 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 FCGR3BO75015 233 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 SPAG7O75391 227 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 ATG12O94817 140 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 CDRT1O95170 752 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 GADD45GO95257 159 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 BAG2O95816 211 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 MT-ND6P03923 174 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 KRT8P05787 483 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 PRSS1P07477 247 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 HNRNPCP07910 306 aaKnown RBP eCLIP1.51□□□□□ -2.17
USP40-211ENST00000464956 MRPL3P09001 348 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 FGF2P09038 288 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 ANXA8P13928 327 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 LGALS3P17931 250 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 KRTAP5-9P26371 169 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 GSSP48637 474 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 CNN1P51911 297 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 CXCR4P61073 352 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 FGL1Q08830 312 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 OR2F1Q13607 317 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 SSX1Q16384 188 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 PSG3Q16557 428 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 VWC2Q2TAL6 325 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 TMEM244Q5VVB8 128 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 DLEU7Q6UYE1 221 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 TRMT10CQ7L0Y3 403 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 MOB1BQ7L9L4 216 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 DAZ4Q86SG3 579 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 PUSL1Q8N0Z8 303 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 OR5D14Q8NGL3 314 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 OR6F1Q8NGZ6 308 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 OR4S2Q8NH73 311 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 SETD6Q8TBK2 473 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 C7orf34Q96L11 122 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 IL4I1Q96RQ9 567 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 SH3GL1Q99961 368 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 C1orf43Q9BWL3 253 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 QTRT1Q9BXR0 403 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 SH3BGRL3Q9H299 93 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 PLEKHA2Q9HB19 425 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 CHMP1AQ9HD42 196 aaPredicted RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 HRASLSQ9HDD0 168 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 DAZ3Q9NR90 486 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 AP5S1Q9NUS5 200 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 IL20Q9NYY1 176 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 CCDC167Q9P0B6 97 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 OR1A1Q9P1Q5 309 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 Q9UF83 564 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 KCNK7Q9Y2U2 307 aa1.51□□□□□ -2.17
USP40-211ENST00000464956 CARHSP1Q9Y2V2 147 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 RBM7Q9Y580 266 aaKnown RBP1.51□□□□□ -2.17
USP40-211ENST00000464956 IGKV2-24A0A0C4DH68 120 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 MUC21A0A0G2JKD1 596 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 ZNF670-ZNF695F2Z2N8 137 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 MAGEB4O15481 346 aaPredicted RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 HRASP01112 189 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 HLA-DQA1P01909 254 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 TCRBP04435 133 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 PFN1P07737 140 aaKnown RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 HTR1AP08908 422 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 OR5AC1P0C628 307 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 TRAPPC2P0DI81 140 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 TRAPPC2BP0DI82 140 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 GATA1P15976 413 aaPredicted RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 DUTP33316 252 aaKnown RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 GZMMP51124 257 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 TAS2R43P59537 309 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 IFFO1Q0D2I5 559 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 FHL2Q14192 279 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 GUK1Q16774 197 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 IGSF11Q5DX21 431 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 CGB2Q6NT52 195 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms