RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 TNXAQ16473 311 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 TMEM41BQ5BJD5 291 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 SPINK9Q5DT21 86 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 Q6ZRG5 221 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 DYNAPQ8N1N2 210 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 SRSF12Q8WXF0 261 aaKnown RBP9.31□□□□□ -0.92
USP54-209ENST00000464635 RBMXL1Q96E39 390 aaKnown RBP9.31□□□□□ -0.92
USP54-209ENST00000464635 CXorf58Q96LI9 332 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 P2RX4Q99571 388 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 SH3BGRL3Q9H299 93 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 FBXL15Q9H469 300 aa9.31□□□□□ -0.92
USP54-209ENST00000464635 F11RQ9Y624 299 aaKnown RBP9.31□□□□□ -0.92
USP54-209ENST00000464635 UBE2L5PA0A1B0GUS4 154 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 CLPSL1A2RUU4 121 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 NPIPB5A8MRT5 1133 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 M0QZK8 103 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 FBP1P09467 338 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 H2AFB1P0C5Y9 115 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 OR13C7P0DN81 318 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 CTRB1P17538 263 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 M6PRP20645 277 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 FGF7P21781 194 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 CNTFRP26992 372 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 SSBP2P81877 361 aaPredicted RBP9.3□□□□□ -0.92
USP54-209ENST00000464635 PLGLAQ15195 96 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 ACOT6Q3I5F7 207 aaPredicted RBP9.3□□□□□ -0.92
USP54-209ENST00000464635 ARSJQ5FYB0 599 aaPredicted RBP9.3□□□□□ -0.92
USP54-209ENST00000464635 CTRB2Q6GPI1 263 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 TMEM182Q6ZP80 229 aaPredicted RBP9.3□□□□□ -0.92
USP54-209ENST00000464635 TTC9CQ8N5M4 171 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 TMEM116Q8NCL8 245 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 OR10W1Q8NGF6 305 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 LINC01006Q8NI28 216 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 C17orf50Q8WW18 174 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 RBM14Q96PK6 669 aaKnown RBP9.3□□□□□ -0.92
USP54-209ENST00000464635 HINT2Q9BX68 163 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 PITPNC1Q9UKF7 332 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 FAM96BQ9Y3D0 163 aa9.3□□□□□ -0.92
USP54-209ENST00000464635 WNK1Q9H4A3 2382 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 A0A1B0GUS0 222 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 SEC14L6B5MCN3 397 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 BRI3O95415 125 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 TSPAN15O95858 294 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 CD5P06127 495 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 PAX6P26367 422 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 CRIP2P52943 208 aaPredicted RBP9.29□□□□□ -0.92
USP54-209ENST00000464635 SELENOTP62341 195 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 RUNX1Q01196 453 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 HES1Q14469 280 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 FXYD3Q14802 87 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 Q6ZSV7 163 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 Q8N9W7 124 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 THAP8Q8NA92 274 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 SLC35E1Q96K37 410 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 CITED1Q99966 193 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 RSG1Q9BU20 258 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 PBDC1Q9BVG4 233 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 TPSG1Q9NRR2 321 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 RPRMQ9NS64 109 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 ZNF580Q9UK33 172 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 RNF114Q9Y508 228 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 PLXNB1O43157 2135 aa9.29□□□□□ -0.92
USP54-209ENST00000464635 CTXND1A0A1B0GTU2 59 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 ANKRD34BA5PLL1 514 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 FCN1O00602 326 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 CNIH1O95406 144 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 MYOD1P15172 320 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PROK1P58294 105 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 RPL15P61313 204 aaKnown RBP9.28□□□□□ -0.92
USP54-209ENST00000464635 CX3CL1P78423 397 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PRR20EP86478 221 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PRR20CP86479 221 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PRR20DP86480 221 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PRR20BP86481 221 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 PRR20AP86496 221 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 GAMTQ14353 236 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 CITED4Q96RK1 184 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 ATP6V0BQ99437 205 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 RNF2Q99496 336 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 RASL11BQ9BPW5 248 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 ACTR3CQ9C0K3 210 aaPredicted RBP9.28□□□□□ -0.92
USP54-209ENST00000464635 VPREB3Q9UKI3 123 aa9.28□□□□□ -0.92
USP54-209ENST00000464635 CMYA5Q8N3K9 4069 aa9.27□□□□□ -0.92
USP54-209ENST00000464635 OPN1MWP04001 364 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 OPN1MW2P0DN77 364 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 OPN1MW3P0DN78 364 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 HIST1H1BP16401 226 aaKnown RBP9.27□□□□□ -0.93
USP54-209ENST00000464635 ZP3P21754 424 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 FCGR2BP31994 310 aaPredicted RBP9.27□□□□□ -0.93
USP54-209ENST00000464635 PPT1P50897 306 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 PEA15Q15121 130 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 SPSB3Q6PJ21 355 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 SLC16A13Q7RTY0 426 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 RPP25LQ8N5L8 163 aaKnown RBP9.27□□□□□ -0.93
USP54-209ENST00000464635 FAM213BQ8TBF2 198 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 PIFOQ8TCI5 191 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 ARPC1AQ92747 370 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 MGST2Q99735 147 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 GGTLC1Q9BX51 225 aa9.27□□□□□ -0.93
USP54-209ENST00000464635 HRH4Q9H3N8 390 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 435.8 ms