RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 CLN5O75503 358 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 SPP1P10451 314 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 ELK1P19419 428 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 PI3P19957 117 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 TBPP20226 339 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 ETV6P41212 452 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 RORCP51449 518 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 MORN3Q6PF18 240 aaPredicted RBP11.25□□□□□ -0.61
SKA3-204ENST00000462482 TRAV30A0A087WSZ9 112 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 A0A0B4J293 547 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 A0A1B0GU03 582 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 IGLL5B9A064 214 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 HPGDSO60760 199 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 B3GALNT1O75752 331 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 IGKV1-5P01602 117 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 NCS1P62166 190 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 RNASE12Q5GAN4 147 aaKnown RBP11.24□□□□□ -0.61
SKA3-204ENST00000462482 LILRB2Q8N423 598 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 OR4X1Q8NH49 305 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 C15orf40Q8WUR7 153 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 AP3S1Q92572 193 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 TP53RKQ96S44 253 aa11.24□□□□□ -0.61
SKA3-204ENST00000462482 HELTA6NFD8 242 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 RNASE2P10153 161 aaKnown RBP11.23□□□□□ -0.61
SKA3-204ENST00000462482 MIFP14174 115 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 RPL5P46777 297 aaKnown RBP11.23□□□□□ -0.61
SKA3-204ENST00000462482 P2RY1P47900 373 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 PPP5CP53041 499 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 VBP1P61758 197 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 FUNDC2Q9BWH2 189 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 HRH4Q9H3N8 390 aa11.23□□□□□ -0.61
SKA3-204ENST00000462482 CD3DP04234 171 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 ZNF688P0C7X2 276 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 CRYBB3P26998 211 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 AP2S1P53680 142 aaPredicted RBP11.22□□□□□ -0.61
SKA3-204ENST00000462482 SCGB2B2Q4G0G5 96 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 PVRIGQ6DKI7 326 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 TRPT1Q86TN4 253 aaKnown RBP11.22□□□□□ -0.61
SKA3-204ENST00000462482 LHFPL1Q86WI0 220 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 FAM24BQ8N5W8 94 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 TERB2Q8NHR7 220 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 Q8WTZ3 238 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 HEYLQ9NQ87 328 aaPredicted RBP11.22□□□□□ -0.61
SKA3-204ENST00000462482 KLK11Q9UBX7 282 aa11.22□□□□□ -0.61
SKA3-204ENST00000462482 IGHV4-28A0A0C4DH34 117 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 K7EQG2 157 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 P0C879 139 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 HTR2BP41595 481 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 SPCS3P61009 180 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 DHRS2Q13268 280 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 SP6Q3SY56 376 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 FAM219AQ8IW50 185 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 Q8NAQ8 132 aa11.21□□□□□ -0.61
SKA3-204ENST00000462482 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.21□□□□□ -0.61
SKA3-204ENST00000462482 C14orf166Q9Y224 244 aaKnown RBP11.21□□□□□ -0.61
SKA3-204ENST00000462482 TRAV10A0A0B4J240 114 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 KNCNA6PVL3 124 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 RAB3DO95716 219 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 SLC25A4P12235 298 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 UCP1P25874 307 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 HLA-DMBP28068 263 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 TAS2R19P59542 299 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 NUTF2P61970 127 aaKnown RBP11.2□□□□□ -0.62
SKA3-204ENST00000462482 TIGITQ495A1 244 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 ACTL10Q5JWF8 245 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 OR1S2Q8NGQ3 325 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 OR52I2Q8NH67 350 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 FNDC4Q9H6D8 234 aaPredicted RBP11.2□□□□□ -0.62
SKA3-204ENST00000462482 EXTL2Q9UBQ6 330 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 MTFP1Q9UDX5 166 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 TBC1D24Q9ULP9 559 aa11.2□□□□□ -0.62
SKA3-204ENST00000462482 TEX13DA0A0J9YY54 714 aaPredicted RBP11.19□□□□□ -0.62
SKA3-204ENST00000462482 HNRNPCP07910 306 aaKnown RBP eCLIP11.19□□□□□ -0.62
SKA3-204ENST00000462482 SNRPD3P62318 126 aaKnown RBP11.19□□□□□ -0.62
SKA3-204ENST00000462482 ETFRF1Q6IPR1 90 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 NOXA1Q86UR1 476 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 TMEM229BQ8NBD8 167 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 OR13C8Q8NGS7 320 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 OR52E5Q8NH55 327 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 C1QTNF4Q9BXJ3 329 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 CACFD1Q9UGQ2 172 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 APLNQ9ULZ1 77 aa11.19□□□□□ -0.62
SKA3-204ENST00000462482 CEBPZOSA8MTT3 80 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 GSTZ1O43708 216 aaPredicted RBP11.18□□□□□ -0.62
SKA3-204ENST00000462482 IGKV1-17P01599 117 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 ZNF182P17025 639 aaPredicted RBP11.18□□□□□ -0.62
SKA3-204ENST00000462482 RND2P52198 227 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 DHODHQ02127 395 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 MEF2DQ14814 521 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 MLANAQ16655 118 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 PSMG4Q5JS54 123 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 MARCH1Q8TCQ1 289 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 RNASEH2CQ8TDP1 164 aaKnown RBP11.18□□□□□ -0.62
SKA3-204ENST00000462482 ABHD1Q96SE0 405 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 TMEM222Q9H0R3 208 aa11.18□□□□□ -0.62
SKA3-204ENST00000462482 MRPL36Q9P0J6 103 aaKnown RBP11.18□□□□□ -0.62
SKA3-204ENST00000462482 ZNF705EA8MWA4 302 aaPredicted RBP11.17□□□□□ -0.62
SKA3-204ENST00000462482 RBMY1A1P0DJD3 496 aaKnown RBP11.17□□□□□ -0.62
SKA3-204ENST00000462482 RBMY1CP0DJD4 496 aa11.17□□□□□ -0.62
SKA3-204ENST00000462482 OR10J1P30954 320 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms