RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 GINS3Q9BRX5 216 aa15.83■□□□□ 0.12
HMGB3-205ENST00000455596 RHPN1-AS1Q9BWJ2 59 aa15.83■□□□□ 0.12
HMGB3-205ENST00000455596 UBQLN2Q9UHD9 624 aa15.83■□□□□ 0.12
HMGB3-205ENST00000455596 OR4C46A6NHA9 309 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 TMEM50AO95807 157 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 AKR1C4P17516 323 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 HTR2BP41595 481 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 AP3S2P59780 193 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 ZNF600Q6ZNG1 722 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 TOMM5Q8N4H5 51 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 TRIM63Q969Q1 353 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 RNF2Q99496 336 aa15.82■□□□□ 0.12
HMGB3-205ENST00000455596 HEYLQ9NQ87 328 aaPredicted RBP15.82■□□□□ 0.12
HMGB3-205ENST00000455596 IGHV3-49A0A0A0MS15 119 aa15.81■□□□□ 0.12
HMGB3-205ENST00000455596 KLF9Q13886 244 aaPredicted RBP15.81■□□□□ 0.12
HMGB3-205ENST00000455596 TOMM20LQ6UXN7 152 aa15.81■□□□□ 0.12
HMGB3-205ENST00000455596 RBM38Q9H0Z9 239 aaKnown RBP15.81■□□□□ 0.12
HMGB3-205ENST00000455596 FNDC4Q9H6D8 234 aaPredicted RBP15.81■□□□□ 0.12
HMGB3-205ENST00000455596 PRR13Q9NZ81 148 aa15.81■□□□□ 0.12
HMGB3-205ENST00000455596 CACFD1Q9UGQ2 172 aa15.81■□□□□ 0.12
HMGB3-205ENST00000455596 V9GYH0 126 aa15.81■□□□□ 0.12
HMGB3-205ENST00000455596 CEBPZOSA8MTT3 80 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 SCGB2A1O75556 95 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 SULT1A3P0DMM9 295 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 SULT1A4P0DMN0 295 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 ANXA3P12429 323 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 BMI1P35226 326 aa15.8■□□□□ 0.12
HMGB3-205ENST00000455596 PUS1Q9Y606 427 aaKnown RBP eCLIP15.8■□□□□ 0.12
HMGB3-205ENST00000455596 RPS10-NUDT3A0A1W2PQS6 291 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 CLN5O75503 358 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 SUPT4H1P63272 117 aaKnown RBP15.79■□□□□ 0.12
HMGB3-205ENST00000455596 ZNF79Q15937 498 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 MLANAQ16655 118 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 C2orf83Q53S99 150 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 ZFAND6Q6FIF0 208 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 OR4X1Q8NH49 305 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 ZFAND3Q9H8U3 227 aa15.79■□□□□ 0.12
HMGB3-205ENST00000455596 IGHV3OR16-13A0A075B7E8 117 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 IGHV3-74A0A0B4J1X5 117 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 A0A0B4J2A0 478 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 ZNF701M0R085 212 aaPredicted RBP15.78■□□□□ 0.12
HMGB3-205ENST00000455596 NXPH3O95157 252 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 SRPXP78539 464 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 ODF3L2Q3SX64 289 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 LGI3Q8N145 548 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 SLC24A4Q8NFF2 622 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 MRPL36Q9P0J6 103 aaKnown RBP15.78■□□□□ 0.12
HMGB3-205ENST00000455596 SHPKQ9UHJ6 478 aa15.78■□□□□ 0.12
HMGB3-205ENST00000455596 TRAV30A0A087WSZ9 112 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 CD5P06127 495 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 CCR6P51684 374 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 FAM90A2PQ658T7 463 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 CCDC190Q86UF4 302 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 DEDD2Q8WXF8 326 aa15.77■□□□□ 0.12
HMGB3-205ENST00000455596 IGKV3-7A0A075B6H7 116 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 PIGBOS1A0A0B4J2F0 54 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 A0A1B0GU03 582 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 TFPI2P48307 235 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 APOC4P55056 127 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 CMC4P56277 68 aaPredicted RBP15.76■□□□□ 0.11
HMGB3-205ENST00000455596 SMCO1Q147U7 214 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 NMSQ5H8A3 153 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 TCF24Q7RTU0 167 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 LYZL2Q7Z4W2 148 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 TMED4Q7Z7H5 227 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 NOXA1Q86UR1 476 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 RNASEH2CQ8TDP1 164 aaKnown RBP15.76■□□□□ 0.11
HMGB3-205ENST00000455596 ST8SIA2Q92186 375 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 VSIRQ9H7M9 311 aa15.76■□□□□ 0.11
HMGB3-205ENST00000455596 SLC25A4P12235 298 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 NPY1RP25929 384 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 PAFAH1B2P68402 229 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 TMEM128Q5BJH2 165 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 SPANXN2Q5MJ10 180 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 SLC25A21Q9BQT8 299 aaPredicted RBP15.75■□□□□ 0.11
HMGB3-205ENST00000455596 TMEM231Q9H6L2 316 aa15.75■□□□□ 0.11
HMGB3-205ENST00000455596 APOHP02749 345 aaPredicted RBP15.74■□□□□ 0.11
HMGB3-205ENST00000455596 NPPCP23582 126 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 TNFRSF9Q07011 255 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 ETFRF1Q6IPR1 90 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 GBGT1Q8N5D6 347 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 IL17DQ8TAD2 202 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 OVOL2Q9BRP0 275 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 HSPB7Q9UBY9 170 aa15.74■□□□□ 0.11
HMGB3-205ENST00000455596 DUXBA0A1W2PPF3 345 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 A0A1W2PS18 150 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 UBE2CO00762 179 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 TIGITQ495A1 244 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 PRSS54Q6PEW0 395 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 OR1S2Q8NGQ3 325 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 METTL26Q96S19 204 aa15.73■□□□□ 0.11
HMGB3-205ENST00000455596 KMT2CQ8NEZ4 4911 aaKnown RBP15.73■□□□□ 0.11
HMGB3-205ENST00000455596 IGHV3-66A0A0C4DH42 116 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 KIR2DL5BA0A0G2JN68 375 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 KIR2DL5BA0A0G2JPC4 375 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 IFNA10P01566 189 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 IGKV1-17P01599 117 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 VAMP1P23763 118 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 RND2P52198 227 aa15.72■□□□□ 0.11
HMGB3-205ENST00000455596 Q6ZWC4 215 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms