RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 HAPLN4Q86UW8 402 aa15.14■□□□□ 0.01
COL9A3-202ENST00000452372 DUSP18Q8NEJ0 188 aa15.14■□□□□ 0.01
COL9A3-202ENST00000452372 OR52B4Q8NGK2 314 aa15.14■□□□□ 0.01
COL9A3-202ENST00000452372 TMEM170AQ8WVE7 144 aa15.14■□□□□ 0.01
COL9A3-202ENST00000452372 FNDC4Q9H6D8 234 aaPredicted RBP15.14■□□□□ 0.01
COL9A3-202ENST00000452372 NPY1RP25929 384 aa15.13■□□□□ 0.01
COL9A3-202ENST00000452372 ATP5IP56385 69 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-202ENST00000452372 UNQ9165/PRO28630Q6UXU0 137 aa15.13■□□□□ 0.01
COL9A3-202ENST00000452372 RNASEH2CQ8TDP1 164 aaKnown RBP15.13■□□□□ 0.01
COL9A3-202ENST00000452372 PRR25Q96S07 402 aa15.13■□□□□ 0.01
COL9A3-202ENST00000452372 B9D2Q9BPU9 175 aa15.13■□□□□ 0.01
COL9A3-202ENST00000452372 PALMDQ9NP74 551 aa15.13■□□□□ 0.01
COL9A3-202ENST00000452372 TMEM213A2RRL7 107 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 NDUFA4O00483 81 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 NUPL2O15504 423 aaKnown RBP15.12■□□□□ 0.01
COL9A3-202ENST00000452372 GNG7O60262 68 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 MED6O75586 246 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 IFNA10P01566 189 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 FOLR2P14207 255 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 OPRK1P41145 380 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 ELLP55199 621 aaPredicted RBP15.12■□□□□ 0.01
COL9A3-202ENST00000452372 MLANAQ16655 118 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 ENKURQ8TC29 256 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 UFC1Q9Y3C8 167 aa15.12■□□□□ 0.01
COL9A3-202ENST00000452372 MPTX1A8MV57 137 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 CBLN1P23435 193 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 TM4SF20Q53R12 229 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 OR4X1Q8NH49 305 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 ZNF431Q8TF32 576 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-202ENST00000452372 TMEM190Q8WZ59 177 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 SEC22CQ9BRL7 303 aa15.11■□□□□ 0.01
COL9A3-202ENST00000452372 RPS10-NUDT3A0A1W2PQS6 291 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 SYNGR2O43760 224 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 LY86O95711 162 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 TMEM50AO95807 157 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 GP9P14770 177 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 EDN2P20800 178 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 DEFA1P59665 94 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 DEFA3P59666 94 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 ID3Q02535 119 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 RELQ04864 619 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-202ENST00000452372 OR2K2Q8NGT1 345 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 ZNF414Q96IQ9 312 aa15.1■□□□□ 0.01
COL9A3-202ENST00000452372 TECRQ9NZ01 308 aaKnown RBP15.1■□□□□ 0.01
COL9A3-202ENST00000452372 MRPL36Q9P0J6 103 aaKnown RBP15.1■□□□□ 0.01
COL9A3-202ENST00000452372 RYR3Q15413 4870 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 CLN5O75503 358 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 IL5P05113 134 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 C8orf88P0DMB2 117 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 DEFB114Q30KQ6 69 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 NRARPQ7Z6K4 114 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 OR4D5Q8NGN0 318 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 MARC2Q969Z3 335 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 CIB3Q96Q77 187 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-202ENST00000452372 MAGT1Q9H0U3 335 aa15.09■□□□□ 0.01
COL9A3-202ENST00000452372 MRPL27Q9P0M9 148 aaKnown RBP15.09■□□□□ 0.01
COL9A3-202ENST00000452372 LSM4Q9Y4Z0 139 aaKnown RBP15.09■□□□□ 0.01
COL9A3-202ENST00000452372 HUWE1Q7Z6Z7 4374 aaKnown RBP15.08■□□□□ 0.01
COL9A3-202ENST00000452372 K7EMT4 169 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 IAPPP10997 89 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 SLC25A4P12235 298 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 CD69Q07108 199 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 DCTN2Q13561 401 aaKnown RBP15.08■□□□□ 0
COL9A3-202ENST00000452372 CD300EQ496F6 205 aaPredicted RBP15.08■□□□□ 0
COL9A3-202ENST00000452372 ETFRF1Q6IPR1 90 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 LCN12Q6JVE5 192 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 PRSS54Q6PEW0 395 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 C12orf45Q8N5I9 185 aaPredicted RBP15.08■□□□□ 0
COL9A3-202ENST00000452372 UXS1Q8NBZ7 420 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 DYNLRB2Q8TF09 96 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 CACNG8Q8WXS5 425 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 OR10C1Q96KK4 312 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 DAZ1Q9NQZ3 744 aaKnown RBP15.08■□□□□ 0
COL9A3-202ENST00000452372 STAB2Q8WWQ8 2551 aa15.08■□□□□ 0
COL9A3-202ENST00000452372 IZUMO1RA6ND01 250 aa15.07■□□□□ 0
COL9A3-202ENST00000452372 NKX2-1P43699 371 aaPredicted RBP15.07■□□□□ 0
COL9A3-202ENST00000452372 IAH1Q2TAA2 248 aaPredicted RBP15.07■□□□□ 0
COL9A3-202ENST00000452372 TMEM116Q8NCL8 245 aa15.07■□□□□ 0
COL9A3-202ENST00000452372 C20orf24Q9BUV8 137 aa15.07■□□□□ 0
COL9A3-202ENST00000452372 TRAV30A0A087WSZ9 112 aa15.06■□□□□ 0
COL9A3-202ENST00000452372 C15orf62A8K5M9 175 aa15.06■□□□□ 0
COL9A3-202ENST00000452372 WRBO00258 174 aa15.06■□□□□ 0
COL9A3-202ENST00000452372 IFNA4P05014 189 aa15.06■□□□□ 0
COL9A3-202ENST00000452372 RPP30P78346 268 aaKnown RBP15.06■□□□□ 0
COL9A3-202ENST00000452372 ZBTB8BQ8NAP8 495 aaPredicted RBP15.06■□□□□ 0
COL9A3-202ENST00000452372 IGHV3OR16-8A0A075B7F1 116 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 SCGB2A1O75556 95 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 YIF1AO95070 293 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 GPX4P36969 197 aaPredicted RBP15.05■□□□□ -0
COL9A3-202ENST00000452372 POLR2GP62487 172 aaKnown RBP eCLIP15.05■□□□□ -0
COL9A3-202ENST00000452372 RAB11AP62491 216 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 ZNF600Q6ZNG1 722 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 MLXQ9UH92 298 aa15.05■□□□□ -0
COL9A3-202ENST00000452372 ZNF785A8K8V0 405 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 INMT-MINDY4F8WBC2 141 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 IGKV1-17P01599 117 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 RND2P52198 227 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 TOMM20LQ6UXN7 152 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 MARVELD1Q9BSK0 173 aa15.04■□□□□ -0
COL9A3-202ENST00000452372 GSKIPQ9P0R6 139 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms