RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SCP2D1Q9UJQ7 156 aa14.41□□□□□ -0.1
USP40-207ENST00000450940 TRAV14DV4A0A0A6YYC5 116 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 YIF1AO95070 293 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 ZNF600Q6ZNG1 722 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 IL22RA2Q969J5 263 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 TMEM230Q96A57 120 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 GPR146Q96CH1 333 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 SCGB3A2Q96PL1 93 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 LYSTQ99698 3801 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 OVOL2Q9BRP0 275 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 FNDC4Q9H6D8 234 aaPredicted RBP14.4□□□□□ -0.1
USP40-207ENST00000450940 ENY2Q9NPA8 101 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 SACSQ9NZJ4 4579 aa14.4□□□□□ -0.1
USP40-207ENST00000450940 TMEM187Q14656 261 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 TMEM268Q5VZI3 342 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 IL17DQ8TAD2 202 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 GINS3Q9BRX5 216 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 VSIRQ9H7M9 311 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 ZFAND3Q9H8U3 227 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 MRPL36Q9P0J6 103 aaKnown RBP14.39□□□□□ -0.11
USP40-207ENST00000450940 UBQLN2Q9UHD9 624 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 KCNIP3Q9Y2W7 256 aa14.39□□□□□ -0.11
USP40-207ENST00000450940 CLN5O75503 358 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 CD5P06127 495 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 HTR2BP41595 481 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 OR4X1Q8NH49 305 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 CACNG5Q9UF02 275 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 CACFD1Q9UGQ2 172 aa14.38□□□□□ -0.11
USP40-207ENST00000450940 IGHV3-49A0A0A0MS15 119 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 KIR2DL5BA0A0G2JN68 375 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 KIR2DL5BA0A0G2JPC4 375 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 A0A1B0GU03 582 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 CMC4P56277 68 aaPredicted RBP14.37□□□□□ -0.11
USP40-207ENST00000450940 MLANAQ16655 118 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 Q6ZWC4 215 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 WFDC3Q8IUB2 231 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 KIR2DL5AQ8N109 375 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 KIR2DL5BQ8NHK3 375 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 TP53TG1Q9Y2A0 90 aa14.37□□□□□ -0.11
USP40-207ENST00000450940 PUS1Q9Y606 427 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP40-207ENST00000450940 LCE6AA0A183 80 aa14.36□□□□□ -0.11
USP40-207ENST00000450940 UBE2CO00762 179 aa14.36□□□□□ -0.11
USP40-207ENST00000450940 APOC4P55056 127 aa14.36□□□□□ -0.11
USP40-207ENST00000450940 SUPT4H1P63272 117 aaKnown RBP14.36□□□□□ -0.11
USP40-207ENST00000450940 KLF9Q13886 244 aaPredicted RBP14.36□□□□□ -0.11
USP40-207ENST00000450940 C2orf83Q53S99 150 aa14.36□□□□□ -0.11
USP40-207ENST00000450940 TRIM63Q969Q1 353 aa14.36□□□□□ -0.11
USP40-207ENST00000450940 HEYLQ9NQ87 328 aaPredicted RBP14.36□□□□□ -0.11
USP40-207ENST00000450940 APOHP02749 345 aaPredicted RBP14.35□□□□□ -0.11
USP40-207ENST00000450940 BMI1P35226 326 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 OPRK1P41145 380 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 NMSQ5H8A3 153 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 LILRB2Q8N423 598 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 ST8SIA2Q92186 375 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 MCUBQ9NWR8 336 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 V9GYH0 126 aa14.35□□□□□ -0.11
USP40-207ENST00000450940 IGHV3OR16-13A0A075B7E8 117 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 TRAV30A0A087WSZ9 112 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 IGHV3-74A0A0B4J1X5 117 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 A0A0B4J2A0 478 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 IGKV1-17P01599 117 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 SULT1A3P0DMM9 295 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 SULT1A4P0DMN0 295 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 TCF24Q7RTU0 167 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 RNASEH2CQ8TDP1 164 aaKnown RBP14.34□□□□□ -0.11
USP40-207ENST00000450940 TMEM170AQ8WVE7 144 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 RBM38Q9H0Z9 239 aaKnown RBP14.34□□□□□ -0.11
USP40-207ENST00000450940 SHPKQ9UHJ6 478 aa14.34□□□□□ -0.11
USP40-207ENST00000450940 TRAV2A0A0B4J234 112 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 RPS10-NUDT3A0A1W2PQS6 291 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 NPPCP23582 126 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 SLC24A4Q8NFF2 622 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 DEDD2Q8WXF8 326 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 MAP6D1Q9H9H5 199 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 PRR13Q9NZ81 148 aa14.33□□□□□ -0.12
USP40-207ENST00000450940 CEBPZOSA8MTT3 80 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 SPRY2O43597 315 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 SCGB2A1O75556 95 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 SLC25A4P12235 298 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 AKR1C4P17516 323 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 CRYBB3P26998 211 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 FAUP35544 74 aaKnown RBP14.32□□□□□ -0.12
USP40-207ENST00000450940 CCR6P51684 374 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 AP3S2P59780 193 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 PAFAH1B2P68402 229 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 SRPXP78539 464 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 ZNF79Q15937 498 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 PYDC2Q56P42 97 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 PRSS54Q6PEW0 395 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 LYZL2Q7Z4W2 148 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 CCDC190Q86UF4 302 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 APRG1Q8IVJ8 170 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 STPG3Q8N7X2 389 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 HSPB7Q9UBY9 170 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 DNAH1Q9P2D7 4330 aa14.32□□□□□ -0.12
USP40-207ENST00000450940 ZNF701M0R085 212 aaPredicted RBP14.31□□□□□ -0.12
USP40-207ENST00000450940 DFFBO76075 338 aa14.31□□□□□ -0.12
USP40-207ENST00000450940 TFPI2P48307 235 aa14.31□□□□□ -0.12
USP40-207ENST00000450940 TNFRSF9Q07011 255 aa14.31□□□□□ -0.12
USP40-207ENST00000450940 SMCO1Q147U7 214 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms