RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CCDC59Q9P031 241 aaKnown RBP15.33■□□□□ 0.04
SDC1-205ENST00000447124 C14orf166Q9Y224 244 aaKnown RBP15.33■□□□□ 0.04
SDC1-205ENST00000447124 PUS1Q9Y606 427 aaKnown RBP eCLIP15.33■□□□□ 0.04
SDC1-205ENST00000447124 SPRY2O43597 315 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 AKAIN1P0CW23 69 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 HOXA1P49639 335 aaPredicted RBP15.32■□□□□ 0.04
SDC1-205ENST00000447124 SUB1P53999 127 aaKnown RBP eCLIP15.32■□□□□ 0.04
SDC1-205ENST00000447124 APOC4P55056 127 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 SURF2Q15527 256 aaPredicted RBP15.32■□□□□ 0.04
SDC1-205ENST00000447124 DEFB135Q30KP9 77 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 ZNF600Q6ZNG1 722 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 OR51S1Q8NGJ8 323 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 ST8SIA2Q92186 375 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 SLIRPQ9GZT3 109 aaKnown RBP15.32■□□□□ 0.04
SDC1-205ENST00000447124 MAP6D1Q9H9H5 199 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.32■□□□□ 0.04
SDC1-205ENST00000447124 TP53TG1Q9Y2A0 90 aa15.32■□□□□ 0.04
SDC1-205ENST00000447124 IGHV3-66A0A0C4DH42 116 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 KIR2DL5BA0A0G2JN68 375 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 KIR2DL5BA0A0G2JPC4 375 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 CRYM-AS1A6NIL9 109 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 UBE2CO00762 179 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 GSTZ1O43708 216 aaPredicted RBP15.31■□□□□ 0.04
SDC1-205ENST00000447124 RPL5P46777 297 aaKnown RBP15.31■□□□□ 0.04
SDC1-205ENST00000447124 SPCS3P61009 180 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 DHODHQ02127 395 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 TCF24Q7RTU0 167 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 FAM219AQ8IW50 185 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 KIR2DL5AQ8N109 375 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 OR52E5Q8NH55 327 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 KIR2DL5BQ8NHK3 375 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 RNASE11Q8TAA1 199 aaKnown RBP15.31■□□□□ 0.04
SDC1-205ENST00000447124 RBPMSQ93062 196 aaKnown RBP15.31■□□□□ 0.04
SDC1-205ENST00000447124 RNF183Q96D59 192 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 GALNT14Q96FL9 552 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 BCL7BQ9BQE9 202 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 ENY2Q9NPA8 101 aa15.31■□□□□ 0.04
SDC1-205ENST00000447124 A0A0J9YWU9 116 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 ANKRD20A5PA0PJZ0 165 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 CORTO00230 105 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 CLN5O75503 358 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 DFFBO76075 338 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 TNFSF8P32971 234 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 STPG3Q8N7X2 389 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 OR4X1Q8NH49 305 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 TMEM230Q96A57 120 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 C6orf62Q9GZU0 229 aaPredicted RBP15.3■□□□□ 0.04
SDC1-205ENST00000447124 RABL2AQ9UBK7 228 aaPredicted RBP15.3■□□□□ 0.04
SDC1-205ENST00000447124 CACNG5Q9UF02 275 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 RABL2BQ9UNT1 228 aa15.3■□□□□ 0.04
SDC1-205ENST00000447124 BIRC6Q9NR09 4857 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 BMI1P35226 326 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 TMEM268Q5VZI3 342 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 GINS3Q9BRX5 216 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 PRR13Q9NZ81 148 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 TMEM56-RWDD3S4R434 201 aa15.29■□□□□ 0.04
SDC1-205ENST00000447124 H3BMQ9 156 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 IGKV1-17P01599 117 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 OPRK1P41145 380 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 CMC4P56277 68 aaPredicted RBP15.28■□□□□ 0.04
SDC1-205ENST00000447124 TMEM187Q14656 261 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 LYG2Q86SG7 212 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 TMEM170AQ8WVE7 144 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 PRRT1Q99946 306 aa15.28■□□□□ 0.04
SDC1-205ENST00000447124 TNFRSF9Q07011 255 aa15.27■□□□□ 0.04
SDC1-205ENST00000447124 TIGITQ495A1 244 aa15.27■□□□□ 0.04
SDC1-205ENST00000447124 FAM24BQ8N5W8 94 aa15.27■□□□□ 0.04
SDC1-205ENST00000447124 MS4A6AQ9H2W1 248 aa15.27■□□□□ 0.04
SDC1-205ENST00000447124 RSL24D1Q9UHA3 163 aaKnown RBP15.27■□□□□ 0.04
SDC1-205ENST00000447124 FABP12A6NFH5 140 aa15.26■□□□□ 0.03
SDC1-205ENST00000447124 HTR2BP41595 481 aa15.26■□□□□ 0.03
SDC1-205ENST00000447124 CSTL1Q9H114 145 aa15.26■□□□□ 0.03
SDC1-205ENST00000447124 HEYLQ9NQ87 328 aaPredicted RBP15.26■□□□□ 0.03
SDC1-205ENST00000447124 NPPCP23582 126 aa15.25■□□□□ 0.03
SDC1-205ENST00000447124 PAFAH1B2P68402 229 aa15.25■□□□□ 0.03
SDC1-205ENST00000447124 C2orf83Q53S99 150 aa15.25■□□□□ 0.03
SDC1-205ENST00000447124 PRSS54Q6PEW0 395 aa15.25■□□□□ 0.03
SDC1-205ENST00000447124 CEBPZOSA8MTT3 80 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 JTBO76095 146 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 NXPH3O95157 252 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 CD5P06127 495 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 CRYBB3P26998 211 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 SUPT4H1P63272 117 aaKnown RBP15.24■□□□□ 0.03
SDC1-205ENST00000447124 MCFD2Q8NI22 146 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 IL22RA2Q969J5 263 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 SCP2D1Q9UJQ7 156 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 KCNIP3Q9Y2W7 256 aa15.24■□□□□ 0.03
SDC1-205ENST00000447124 DNASE2O00115 360 aaPredicted RBP15.23■□□□□ 0.03
SDC1-205ENST00000447124 IGLC1P0CG04 106 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 DEFB131AP59861 70 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 RPL11P62913 178 aaKnown RBP15.23■□□□□ 0.03
SDC1-205ENST00000447124 PMS2P11Q13670 270 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 RBMS2Q15434 407 aaKnown RBP15.23■□□□□ 0.03
SDC1-205ENST00000447124 NMSQ5H8A3 153 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 LYZL2Q7Z4W2 148 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 MCUBQ9NWR8 336 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 U3KQE9 123 aa15.23■□□□□ 0.03
SDC1-205ENST00000447124 AGRNO00468 2067 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 TRAV30A0A087WSZ9 112 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 TRAV2A0A0B4J234 112 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms