RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 IGSF23A1L1A6 192 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 I3L2K1 104 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 CST7O76096 145 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 CDX1P47902 265 aaPredicted RBP13.31□□□□□ -0.28
LIME1-202ENST00000444951 ATP5IP56385 69 aaPredicted RBP13.31□□□□□ -0.28
LIME1-202ENST00000444951 FGL1Q08830 312 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 DEFB136Q30KP8 78 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 BEAN1Q3B7T3 259 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 Q56UQ5 140 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 ACSM6Q6P461 480 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 C8orf86Q6ZUL3 223 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 SCARB1Q8WTV0 552 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 CXorf58Q96LI9 332 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 FNDC4Q9H6D8 234 aaPredicted RBP13.31□□□□□ -0.28
LIME1-202ENST00000444951 ZC4H2Q9NQZ6 224 aa13.31□□□□□ -0.28
LIME1-202ENST00000444951 LYRM2Q9NU23 88 aaPredicted RBP13.31□□□□□ -0.28
LIME1-202ENST00000444951 FXYD6-FXYD2A0A087WZ82 144 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 RPS10-NUDT3A0A1W2PQS6 291 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 PRB2P02812 416 aaPredicted RBP13.3□□□□□ -0.28
LIME1-202ENST00000444951 P2RY1P47900 373 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 KLK9Q2XQG4 91 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 PVRIGQ6DKI7 326 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 TMEM14EPQ6UXP3 125 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 CLEC19AQ6UXS0 136 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 AKAP14Q86UN6 197 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 TMEM217Q8N7C4 229 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 VN1R17PQ8TDU5 208 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 ACY3Q96HD9 319 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 DUX3Q96PT4 197 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 C21orf62Q9NYP8 219 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 KLK9Q9UKQ9 250 aa13.3□□□□□ -0.28
LIME1-202ENST00000444951 OR2T8A6NH00 312 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 ADARB2-AS1A8MUL3 147 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 TRBV12-3P01733 135 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 LGALS1P09382 135 aaKnown RBP13.29□□□□□ -0.28
LIME1-202ENST00000444951 GPR183P32249 361 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 SLC16A13Q7RTY0 426 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 HAPLN4Q86UW8 402 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 NDUFA11Q86Y39 141 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 STX12Q86Y82 276 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 TMEM252Q8N6L7 170 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 ZNF502Q8TBZ5 544 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 C4orf3Q8WVX3 66 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 ST6GAL2Q96JF0 529 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 CCDC140Q96MF4 163 aa13.29□□□□□ -0.28
LIME1-202ENST00000444951 MRPL36Q9P0J6 103 aaKnown RBP13.29□□□□□ -0.28
LIME1-202ENST00000444951 TRBV7-1A0A0A6YYK4 115 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 SMCO3A2RU48 225 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 PPP5D1E7EU14 171 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 CLEC3BP05452 202 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 MFAP4P55083 255 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 NHLH2Q02577 135 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 CD69Q07108 199 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 ARL16Q0P5N6 197 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 SAMD5Q5TGI4 173 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 ETFRF1Q6IPR1 90 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 ZNF343Q6P1L6 599 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 OR10P1Q8NGE3 313 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 SLC25A31Q9H0C2 315 aa13.28□□□□□ -0.28
LIME1-202ENST00000444951 PMS2P5A8MQ11 134 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 I3L521 148 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 RPL12P30050 165 aaKnown RBP13.27□□□□□ -0.29
LIME1-202ENST00000444951 SULT1A1P50225 295 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 RND2P52198 227 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 EWSR1Q01844 656 aaKnown RBP eCLIP13.27□□□□□ -0.29
LIME1-202ENST00000444951 SLC38A11Q08AI6 406 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 ACOT7LQ6ZUV0 252 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 SLC35E1Q96K37 410 aa13.27□□□□□ -0.29
LIME1-202ENST00000444951 PEF1Q9UBV8 284 aaKnown RBP13.27□□□□□ -0.29
LIME1-202ENST00000444951 IGHV4OR15-8A0A075B7B6 117 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 A0A087WW49 117 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.26□□□□□ -0.29
LIME1-202ENST00000444951 PRSS46E5RG02 174 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 G3V3Q6 166 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 GNG7O60262 68 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 SLC25A4P12235 298 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 LYL1P12980 280 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 ARL3P36405 182 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 GPX4P36969 197 aaPredicted RBP13.26□□□□□ -0.29
LIME1-202ENST00000444951 NUP62P37198 522 aaPredicted RBP13.26□□□□□ -0.29
LIME1-202ENST00000444951 CD300CQ08708 224 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 GAMTQ14353 236 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 KPRPQ5T749 579 aaPredicted RBP13.26□□□□□ -0.29
LIME1-202ENST00000444951 ZNF546Q86UE3 836 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 LILRB2Q8N423 598 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 OR11H1Q8NG94 326 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 OR1N2Q8NGR9 330 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 NPIPB3Q92617 1050 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 DPF1Q92782 380 aa13.26□□□□□ -0.29
LIME1-202ENST00000444951 BSCL2Q96G97 398 aaPredicted RBP13.26□□□□□ -0.29
LIME1-202ENST00000444951 IGHV3-35A0A0C4DH35 117 aa13.25□□□□□ -0.29
LIME1-202ENST00000444951 NPBWR1P48145 328 aa13.25□□□□□ -0.29
LIME1-202ENST00000444951 AP2S1P53680 142 aaPredicted RBP13.25□□□□□ -0.29
LIME1-202ENST00000444951 AKR1C1Q04828 323 aa13.25□□□□□ -0.29
LIME1-202ENST00000444951 RAX2Q96IS3 184 aa13.25□□□□□ -0.29
LIME1-202ENST00000444951 SMIM3Q9BZL3 60 aa13.25□□□□□ -0.29
LIME1-202ENST00000444951 F8W735 103 aaPredicted RBP13.24□□□□□ -0.29
LIME1-202ENST00000444951 CCL24O00175 119 aa13.24□□□□□ -0.29
LIME1-202ENST00000444951 ARPC5O15511 151 aa13.24□□□□□ -0.29
LIME1-202ENST00000444951 HSPB1P04792 205 aaKnown RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms