RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GAR1Q9NY12 217 aaKnown RBP12.22□□□□□ -0.45
USP40-206ENST00000443711 C21orf62Q9NYP8 219 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 S4R3C0 116 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.21□□□□□ -0.45
USP40-206ENST00000443711 ADARB2-AS1A8MUL3 147 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 I3L521 148 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 IGHV3-23P01764 117 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 Q5BKY6 102 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 OR8G2PQ6IF36 304 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 ACSM6Q6P461 480 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 C18orf65Q6ZTR6 163 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 AKAP14Q86UN6 197 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 STX12Q86Y82 276 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 ATP6V0BQ99437 205 aa12.21□□□□□ -0.45
USP40-206ENST00000443711 PEF1Q9UBV8 284 aaKnown RBP12.21□□□□□ -0.45
USP40-206ENST00000443711 IGSF23A1L1A6 192 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 ANKRD34BA5PLL1 514 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 PMS2P5A8MQ11 134 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 PRSS46E5RG02 174 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 CST7O76096 145 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 IGHV3-48P01763 117 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 FCGR2BP31994 310 aaPredicted RBP12.2□□□□□ -0.46
USP40-206ENST00000443711 NPBWR1P48145 328 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 SULT1A1P50225 295 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 Q56UQ5 140 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 CLEC19AQ6UXS0 136 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 SLC16A13Q7RTY0 426 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 ST6GAL2Q96JF0 529 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 SLC35E1Q96K37 410 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 CCDC140Q96MF4 163 aa12.2□□□□□ -0.46
USP40-206ENST00000443711 HSPB1P04792 205 aaKnown RBP12.19□□□□□ -0.46
USP40-206ENST00000443711 CLEC3BP05452 202 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 RPL12P30050 165 aaKnown RBP12.19□□□□□ -0.46
USP40-206ENST00000443711 NUP62P37198 522 aaPredicted RBP12.19□□□□□ -0.46
USP40-206ENST00000443711 HBG1P69891 147 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 HBG2P69892 147 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 DLK1P80370 383 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 C8orf86Q6ZUL3 223 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 UBAC2Q8NBM4 344 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 OR4X1Q8NH49 305 aa12.19□□□□□ -0.46
USP40-206ENST00000443711 FXYD6-FXYD2A0A087WZ82 144 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 G3V3Q6 166 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 SMLR1H3BR10 107 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 GNG7O60262 68 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 S100A11P31949 105 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 ARL3P36405 182 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 RND2P52198 227 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 EWSR1Q01844 656 aaKnown RBP eCLIP12.18□□□□□ -0.46
USP40-206ENST00000443711 NHLH2Q02577 135 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 BAXQ07812 192 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 SLC38A11Q08AI6 406 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 ARL16Q0P5N6 197 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 GAMTQ14353 236 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 ZNF546Q86UE3 836 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 HAPLN4Q86UW8 402 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 TCTE3Q8IZS6 198 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 TMEM116Q8NCL8 245 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 OR1N2Q8NGR9 330 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 DPF1Q92782 380 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 BSCL2Q96G97 398 aaPredicted RBP12.18□□□□□ -0.46
USP40-206ENST00000443711 ACY3Q96HD9 319 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 GGACTQ9BVM4 153 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 ZC4H2Q9NQZ6 224 aa12.18□□□□□ -0.46
USP40-206ENST00000443711 TRAV30A0A087WSZ9 112 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 OR2T8A6NH00 312 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 FNDC10F2Z333 226 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 CLN5O75503 358 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 GPR183P32249 361 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 ATP6V1FQ16864 119 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 DEFB136Q30KP8 78 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 SPSB3Q6PJ21 355 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 ACOT7LQ6ZUV0 252 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 TMEM217Q8N7C4 229 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 INO80EQ8NBZ0 244 aaPredicted RBP12.17□□□□□ -0.46
USP40-206ENST00000443711 OR11H1Q8NG94 326 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 OR4F17Q8NGA8 305 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 NPIPB3Q92617 1050 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 RAX2Q96IS3 184 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 OR4F4Q96R69 305 aa12.17□□□□□ -0.46
USP40-206ENST00000443711 MRPL36Q9P0J6 103 aaKnown RBP12.17□□□□□ -0.46
USP40-206ENST00000443711 IGHV4OR15-8A0A075B7B6 117 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 A0A087WW49 117 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 F8W735 103 aaPredicted RBP12.16□□□□□ -0.46
USP40-206ENST00000443711 LINC01619G3V211 115 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 M0QZ24 198 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 CCL24O00175 119 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 NUPL2O15504 423 aaKnown RBP12.16□□□□□ -0.46
USP40-206ENST00000443711 TGOLN2O43493 480 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 GGCTO75223 188 aaKnown RBP12.16□□□□□ -0.46
USP40-206ENST00000443711 TRBV12-3P01733 135 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 ZP3P21754 424 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 MYCNOSP40205 109 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 ZNF616Q08AN1 781 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 LILRB2Q8N423 598 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 OR1S2Q8NGQ3 325 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 SPATA3Q8NHX4 192 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 TNFSF18Q9UNG2 199 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 HSPB11Q9Y547 144 aa12.16□□□□□ -0.46
USP40-206ENST00000443711 WNK1Q9H4A3 2382 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms