RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 CTRB2Q6GPI1 263 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 SPNS3Q6ZMD2 512 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 CYB561D1Q8N8Q1 229 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 TMEM116Q8NCL8 245 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 C1orf159Q96HA4 380 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 SMIM7Q9BQ49 75 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 SCRT1Q9BWW7 348 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 AWAT1Q58HT5 328 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 LDLRAD2Q5SZI1 272 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 UNQ5815/PRO19632Q6UWF5 114 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 TTC9CQ8N5M4 171 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 FAM110DQ8TAY7 271 aaPredicted RBP4.8□□□□□ -1.64
VPS50-205ENST00000441602 RPUSD4Q96CM3 377 aaKnown RBP4.8□□□□□ -1.64
VPS50-205ENST00000441602 MEGF9Q9H1U4 602 aa4.8□□□□□ -1.64
VPS50-205ENST00000441602 MGAQ8IWI9 3026 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 C9JQL5 133 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 H3BQ15 152 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 GNG7O60262 68 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 CD24P25063 80 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 TMEM241Q24JQ0 296 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 MRGPRG-AS1Q2M3A8 158 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 PRSS57Q6UWY2 283 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 MBD6Q96DN6 1003 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 TXN2Q99757 166 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 FNDC4Q9H6D8 234 aaPredicted RBP4.79□□□□□ -1.64
VPS50-205ENST00000441602 HIGD1AQ9Y241 93 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 C7orf77A4D0Y5 90 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 E7EUB6 86 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 TSPAN4O14817 238 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 MT-ND4LP03901 98 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 UBE2L3P68036 154 aaKnown RBP4.79□□□□□ -1.64
VPS50-205ENST00000441602 ZNF674Q2M3X9 581 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 Q56UQ5 140 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 GCSAMLQ5JQS6 135 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 SSX7Q7RTT5 188 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 DYNAPQ8N1N2 210 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 Q8N9W7 124 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 Q8WTZ3 238 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 TMA7Q9Y2S6 64 aaKnown RBP4.79□□□□□ -1.64
VPS50-205ENST00000441602 DMDP11532 3685 aa4.79□□□□□ -1.64
VPS50-205ENST00000441602 APELAP0DMC3 54 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 PLA2G2AP14555 144 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 UBE2G2P60604 165 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 SRSF1Q07955 248 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS50-205ENST00000441602 Q5PR19 223 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 MIR17HGQ75NE6 70 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 C15orf54Q8N8G6 183 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 SGMS2Q8NHU3 365 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 VN1R17PQ8TDU5 208 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 ZNF48Q96MX3 618 aaPredicted RBP4.78□□□□□ -1.64
VPS50-205ENST00000441602 TCEAL7Q9BRU2 100 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 PAXXQ9BUH6 204 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 TMUB1Q9BVT8 246 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 CTDSP1Q9GZU7 261 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 TMPRSS5Q9H3S3 457 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 ZNF355PQ9NSJ1 428 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 DOPEY1Q5JWR5 2465 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 IGHV3OR16-10A0A075B7F0 116 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 TGFAP01135 160 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 RD3LP0DJH9 198 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 RUSC1-AS1Q66K80 236 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 OR5AU1Q8NGC0 362 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 OR51G1Q8NGK1 321 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 OR1B1Q8NGR6 318 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 BTF3L4Q96K17 158 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 TUBA4BQ9H853 241 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 C21orf62Q9NYP8 219 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 DOK5Q9P104 306 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 A0A087WWC5 75 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 A0A1W2PRE2 83 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 I3L2K1 104 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 DNASE2O00115 360 aaPredicted RBP4.78□□□□□ -1.64
VPS50-205ENST00000441602 ORM2P19652 201 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 S100PP25815 95 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 PLP1P60201 277 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 YPEL3P61236 119 aaPredicted RBP4.78□□□□□ -1.64
VPS50-205ENST00000441602 LYZP61626 148 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 MLANAQ16655 118 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 ECSCRQ19T08 205 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 C9orf152Q5JTZ5 239 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 FAM120AOSQ5T036 256 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 ATRAIDQ6UW56 229 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 OR5R1Q8NH85 324 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 OR5B12Q96R08 314 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 SSX3Q99909 188 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 FBXL7Q9UJT9 491 aa4.78□□□□□ -1.64
VPS50-205ENST00000441602 TET2Q6N021 2002 aaPredicted RBP4.78□□□□□ -1.65
VPS50-205ENST00000441602 IGHV7-81A0A0B4J1V7 117 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 PPP1R2P9O14990 202 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 ADIRFQ15847 76 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 CYB5R2Q6BCY4 276 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 EEF1AKMT3Q96AZ1 226 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 FAM103A1Q9BTL3 118 aaKnown RBP4.77□□□□□ -1.65
VPS50-205ENST00000441602 OR51M1Q9H341 326 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 PRRC2CQ9Y520 2896 aaKnown RBP4.77□□□□□ -1.65
VPS50-205ENST00000441602 IGLV11-55A0A075B6I3 123 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 IGHV3-21A0A0B4J1V1 117 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 A0A0U1RQK1 487 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 CXorf65A6NEN9 183 aa4.77□□□□□ -1.65
VPS50-205ENST00000441602 NUPL2O15504 423 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms