RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 F8W735 103 aaPredicted RBP8.69□□□□□ -1.02
COL28A1-203ENST00000435823 IGHV3-48P01763 117 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 CTSGP08311 255 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 HOXB5P09067 269 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 OR4E1P0C645 316 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 SLC25A6P12236 298 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 CBLN1P23435 193 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 TNFRSF9Q07011 255 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 ZNF846Q147U1 533 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 BSXQ3C1V8 233 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 C4orf46Q504U0 113 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 PVRIGQ6DKI7 326 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 UNQ9165/PRO28630Q6UXU0 137 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 TMEM190Q8WZ59 177 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 CHRDL1Q9BU40 450 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 HSPB7Q9UBY9 170 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 LSM4Q9Y4Z0 139 aaKnown RBP8.69□□□□□ -1.02
COL28A1-203ENST00000435823 SMAD5-AS1Q9Y6J3 95 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 MED6O75586 246 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 IFNA10P01566 189 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 ANXA7P20073 488 aaKnown RBP8.68□□□□□ -1.02
COL28A1-203ENST00000435823 NPY1RP25929 384 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 CD69Q07108 199 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 DHRS2Q13268 280 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 DEFB114Q30KQ6 69 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 CD300EQ496F6 205 aaPredicted RBP8.68□□□□□ -1.02
COL28A1-203ENST00000435823 C2orf83Q53S99 150 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 MZT2BQ6NZ67 158 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 ADAMTSL5Q6ZMM2 481 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 LYG2Q86SG7 212 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 UXS1Q8NBZ7 420 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 RNASEH2CQ8TDP1 164 aaKnown RBP8.68□□□□□ -1.02
COL28A1-203ENST00000435823 DTD1Q8TEA8 209 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 CACNG8Q8WXS5 425 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 B9D2Q9BPU9 175 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 C20orf24Q9BUV8 137 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 C20orf85Q9H1P6 137 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 RBKSQ9H477 322 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 DAZ1Q9NQZ3 744 aaKnown RBP8.68□□□□□ -1.02
COL28A1-203ENST00000435823 MRPL27Q9P0M9 148 aaKnown RBP8.68□□□□□ -1.02
COL28A1-203ENST00000435823 U3KQ87 197 aa8.68□□□□□ -1.02
COL28A1-203ENST00000435823 TGP01266 2768 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 FAM90A26D6RGX4 464 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 YIF1AO95070 293 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 IFNA21P01568 189 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 TCRBP04435 133 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 EDN2P20800 178 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 ADMP35318 185 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 ATP5IP56385 69 aaPredicted RBP8.67□□□□□ -1.02
COL28A1-203ENST00000435823 PRKDCP78527 4128 aaKnown RBP8.67□□□□□ -1.02
COL28A1-203ENST00000435823 TM4SF20Q53R12 229 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 GGNBP1Q5YKI7 109 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 ETFRF1Q6IPR1 90 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 GTSCR1Q86UQ5 136 aa8.67□□□□□ -1.02
COL28A1-203ENST00000435823 TRAV6A0A075B6T7 132 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 FAM240BA0A1B0GVZ2 78 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 C15orf62A8K5M9 175 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 K7EMT4 169 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 PITX3O75364 302 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 CLN5O75503 358 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 TMEM50AO95807 157 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 C8orf88P0DMB2 117 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 SLC25A4P12235 298 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 ASAH1Q13510 395 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 BTNL8Q6UX41 500 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 ZNF600Q6ZNG1 722 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 OR4X1Q8NH49 305 aa8.66□□□□□ -1.02
COL28A1-203ENST00000435823 FNDC4Q9H6D8 234 aaPredicted RBP8.66□□□□□ -1.02
COL28A1-203ENST00000435823 TRAV30A0A087WSZ9 112 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 IZUMO1RA6ND01 250 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 ADAP1O75689 374 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 UPK1BO75841 260 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 IFNA4P05014 189 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 RPP30P78346 268 aaKnown RBP8.65□□□□□ -1.02
COL28A1-203ENST00000435823 GUCA2BQ16661 112 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 RBPMS2Q6ZRY4 209 aaKnown RBP8.65□□□□□ -1.02
COL28A1-203ENST00000435823 Q8N3U1 123 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 CIB3Q96Q77 187 aaPredicted RBP8.65□□□□□ -1.02
COL28A1-203ENST00000435823 GINS3Q9BRX5 216 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 NUDT15Q9NV35 164 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 MLXQ9UH92 298 aa8.65□□□□□ -1.02
COL28A1-203ENST00000435823 IGHV3OR16-8A0A075B7F1 116 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 TRAV25A0A0B4J276 109 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 WRBO00258 174 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 ZNF207O43670 478 aaKnown RBP8.64□□□□□ -1.03
COL28A1-203ENST00000435823 SYNGR2O43760 224 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 H2AFB2P0C5Z0 115 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 IAPPP10997 89 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 BMI1P35226 326 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 RAB11AP62491 216 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 MLANAQ16655 118 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 LAMTOR1Q6IAA8 161 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 C11orf87Q6NUJ2 197 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 TMEM61Q8N0U2 210 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 ENKURQ8TC29 256 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 MITD1Q8WV92 249 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 TMEM170AQ8WVE7 144 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 WDR89Q96FK6 387 aaPredicted RBP8.64□□□□□ -1.03
COL28A1-203ENST00000435823 OR10C1Q96KK4 312 aa8.64□□□□□ -1.03
COL28A1-203ENST00000435823 TBC1D24Q9ULP9 559 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms