RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SUB1P53999 127 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP4-205ENST00000431357 IBA57Q5T440 356 aaKnown RBP9.18□□□□□ -0.94
USP4-205ENST00000431357 TOMM20LQ6UXN7 152 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 MOB3BQ86TA1 216 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 DOLPP1Q86YN1 238 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 ST6GALNAC3Q8NDV1 305 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 OR9G1Q8NH87 305 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 TMEM167AQ8TBQ9 72 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 FLYWCH2Q96CP2 140 aaKnown RBP9.18□□□□□ -0.94
USP4-205ENST00000431357 IGF2BP2-AS1Q96M15 143 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 HSPB9Q9BQS6 159 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 NAT8BQ9UHF3 227 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 DSCAMO60469 2012 aa9.18□□□□□ -0.94
USP4-205ENST00000431357 SMIM27A0A1W2PRY6 76 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 PSMB11A5LHX3 300 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 H0YJW9 148 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 CCL25O15444 150 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 IGLV2-8P01709 118 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 HLA-DQA1P01909 254 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 GATA2P23769 480 aaPredicted RBP9.17□□□□□ -0.94
USP4-205ENST00000431357 TMEM183BQ1AE95 376 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 TPTE2P1Q5T6R2 138 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 TMEM136Q6ZRR5 245 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 PDPNQ86YL7 162 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 SIGLECL1Q8N7X8 197 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 C8orf31Q8N9H6 132 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 MRPL20Q9BYC9 149 aaKnown RBP9.17□□□□□ -0.94
USP4-205ENST00000431357 CDC42EP3Q9UKI2 254 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 NCOR1O75376 2440 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 RASL11AQ6T310 242 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 TMEM108Q6UXF1 575 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 RPRMLQ8N4K4 120 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 LINC00311Q8N616 119 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 OR4C13Q8NGP0 309 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 FAM167A-AS1Q96KT0 104 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 SLC25A2Q9BXI2 301 aa9.17□□□□□ -0.94
USP4-205ENST00000431357 RNASE7Q9H1E1 156 aaKnown RBP9.17□□□□□ -0.94
USP4-205ENST00000431357 IZUMO1RA6ND01 250 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 GPX1P07203 203 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 UBE2L3P68036 154 aaKnown RBP9.16□□□□□ -0.94
USP4-205ENST00000431357 FAM27E3Q08E93 113 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 MLANAQ16655 118 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 FAM231DQ6ZW35 169 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 OR10W1Q8NGF6 305 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 FAM57AQ8TBR7 257 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 RND1Q92730 232 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 TMEM186Q96B77 213 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 CHRDL1Q9BU40 450 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 ZNF430Q9H8G1 570 aaPredicted RBP9.16□□□□□ -0.94
USP4-205ENST00000431357 GNB4Q9HAV0 340 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 ZNF586Q9NXT0 402 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 C17orf100A8MU93 164 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 COX7A2P2O60397 106 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 REG1AP05451 166 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 MGST1P10620 155 aaKnown RBP9.16□□□□□ -0.94
USP4-205ENST00000431357 ZNF596Q8TC21 504 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 VAMP8Q9BV40 100 aa9.16□□□□□ -0.94
USP4-205ENST00000431357 TCRBV4S1A1TA0A5B7 111 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 FXYD3Q14802 87 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 RNF151Q2KHN1 245 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 C10orf113Q5VZT2 155 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 SSX8Q7RTT4 187 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 THAP8Q8NA92 274 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 OR2T6Q8NHC8 308 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 WIPF2Q8TF74 440 aaPredicted RBP9.15□□□□□ -0.94
USP4-205ENST00000431357 PAXXQ9BUH6 204 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 ZNF331Q9NQX6 463 aaPredicted RBP9.15□□□□□ -0.94
USP4-205ENST00000431357 SERTAD4Q9NUC0 356 aa9.15□□□□□ -0.94
USP4-205ENST00000431357 RAI1Q7Z5J4 1906 aaPredicted RBP9.15□□□□□ -0.94
USP4-205ENST00000431357 PPIAL4EA0A075B759 164 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 PPIAL4DF5H284 164 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 FRMD6-AS1P0C7T7 363 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 PPIAL4FP0DN26 164 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 COL8A2P25067 703 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 TMEM200BQ69YZ2 307 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 ASCL5Q7RTU5 278 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 ZNF738Q8NE65 137 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 STXBP6Q8NFX7 210 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 OR10X1Q8NGY0 326 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 SNRNP40Q96DI7 357 aaKnown RBP9.14□□□□□ -0.95
USP4-205ENST00000431357 KCNS1Q96KK3 526 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 ZNRD1Q9P1U0 126 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 WASHC3Q9Y3C0 194 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 AMMECR1Q9Y4X0 333 aaPredicted RBP9.14□□□□□ -0.95
USP4-205ENST00000431357 PPIAL4AQ9Y536 164 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 F2Z2F3 143 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 ZNF253O75346 499 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 CCL8P80075 99 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 VMA21Q3ZAQ7 101 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 OR4B1Q8NGF8 309 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 VN1R17PQ8TDU5 208 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 GRAMD2BQ96HH9 432 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 ZNF355PQ9NSJ1 428 aa9.14□□□□□ -0.95
USP4-205ENST00000431357 TRAV5A0A0B4J249 113 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 IGHV2-70DA0A0C4DH43 119 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 VSTM5A8MXK1 200 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 C16orf97H3BN30 126 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 K7ERU9 68 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 NDUFB3O43676 98 aa9.13□□□□□ -0.95
USP4-205ENST00000431357 SPINK4O60575 86 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms