RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 MGST1P10620 155 aaKnown RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 CBLN1P23435 193 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 SSX2Q16385 188 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 ZNF705AQ6ZN79 300 aaPredicted RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 NUP37Q8NFH4 326 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 NRGNQ92686 78 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 SSBP3Q9BWW4 388 aaPredicted RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 NIPBLQ6KC79 2804 aaeCLIP6.78□□□□□ -1.32
CD44-208ENST00000428726 IGHV3OR16-13A0A075B7E8 117 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 IGHV3-74A0A0B4J1X5 117 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 CD3EP07766 207 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 CRYBB3P26998 211 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 SUMO1P63165 101 aaKnown RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 HLA-DRB5Q30154 266 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 TEX38Q6PEX7 206 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 LURAP1LQ8IV03 231 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 Q8N7P7 452 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 SERTAD4Q9NUC0 356 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 TMEM242Q9NWH2 141 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 NAT8Q9UHE5 227 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 RPUSD1Q9UJJ7 312 aaKnown RBP6.78□□□□□ -1.32
CD44-208ENST00000428726 TEX15Q9BXT5 2789 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 NKX6-3A6NJ46 265 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 VDAC2P45880 294 aaPredicted RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 RAB4BP61018 213 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 C21orf62-AS1Q17RA5 79 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 ACOT6Q3I5F7 207 aaPredicted RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 TMEM30BQ3MIR4 351 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 LRRC10Q5BKY1 277 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 LDLRAD2Q5SZI1 272 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 SGMS2Q8NHU3 365 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 DDB2Q92466 427 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 FLYWCH2Q96CP2 140 aaKnown RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 ZNF430Q9H8G1 570 aaPredicted RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 MANBALQ9NQG1 85 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 ELOVL5Q9NYP7 299 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 LINC00527Q9UJ94 153 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 WDR83OSQ9Y284 106 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 PAM16Q9Y3D7 125 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 LOXP28300 417 aaPredicted RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 HSPE1P61604 102 aaKnown RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 PKIAP61925 76 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 GNG5P63218 68 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 WT1-ASQ06250 92 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 OR2T10Q8NGZ9 312 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 C22orf15Q8WYQ4 148 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 ADTRPQ96IZ2 230 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 PITPNC1Q9UKF7 332 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 TIMM8BQ9Y5J9 83 aaPredicted RBP6.77□□□□□ -1.33
CD44-208ENST00000428726 TRAPPC1Q9Y5R8 145 aa6.77□□□□□ -1.33
CD44-208ENST00000428726 C15orf61A6NNL5 157 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 MPDU1O75352 247 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 PFN1P07737 140 aaKnown RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 RANP62826 216 aaKnown RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 EFNB3Q15768 340 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 TMEM183AQ8IXX5 376 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 RNASE7Q9H1E1 156 aaKnown RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 FNDC4Q9H6D8 234 aaPredicted RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 UBTD1Q9HAC8 227 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 USP24Q9UPU5 2620 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 NBPF19A0A087WUL8 3843 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 MXRA5Q9NR99 2828 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 TMEM250H0YL14 139 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 GATCO43716 136 aaKnown RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 KBTBD11O94819 623 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 PRB1P04280 392 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 IL3RAP26951 378 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 TFPI2P48307 235 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 LCN2P80188 198 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 ATOH7Q8N100 152 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 DIRC2Q96SL1 478 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 RND2P52198 227 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 RTL8BQ17RB0 113 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 TEX36Q5VZQ5 186 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 TEPPQ6URK8 271 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 SSX8Q7RTT4 187 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 BCL6BQ8N143 479 aaPredicted RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 OR1B1Q8NGR6 318 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 CORO2AQ92828 525 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 CTDSP1Q9GZU7 261 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 LINC00574Q9H8X3 128 aa6.76□□□□□ -1.33
CD44-208ENST00000428726 SOX21Q9Y651 276 aaPredicted RBP6.76□□□□□ -1.33
CD44-208ENST00000428726 TCAPO15273 167 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 CNIH1O95406 144 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 TMPRSS3P57727 454 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 ZNF672Q499Z4 452 aaPredicted RBP6.75□□□□□ -1.33
CD44-208ENST00000428726 TOMM20LQ6UXN7 152 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 REC114Q7Z4M0 266 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 OCC1Q8TAD7 63 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 NABP2Q9BQ15 211 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 TNFRSF19Q9NS68 423 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 INSIG2Q9Y5U4 225 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 IGHV3-49A0A0A0MS15 119 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 PPIAL4CA0A0B4J2A2 164 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 MUC21A0A0G2JKD1 596 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 MUC21A0A140T8X8 626 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 NCBP2LA6PVI3 153 aaKnown RBP6.75□□□□□ -1.33
CD44-208ENST00000428726 H0YJW9 148 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 HRASP01112 189 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms