RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 PROP1O75360 226 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ID3Q02535 119 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF90Q03938 601 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 SLC38A11Q08AI6 406 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GAGE1Q13065 139 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GAGE4Q13068 117 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GAGE5Q13069 117 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GAGE13Q4V321 117 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM27BQ5VT28 67 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 LAIR2Q6ISS4 152 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 TRNP1Q6NT89 227 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MS4A15Q8N5U1 240 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 SPSB4Q96A44 273 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 DERL3Q96Q80 235 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 SDF2Q99470 211 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 PPCSQ9HAB8 311 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZZEF1O43149 2961 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ARAP2Q8WZ64 1704 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 FBN2P35556 2912 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MYLKQ15746 1914 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 LOC100506127A0A0U1RQW1 187 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 C2orf70A6NJV1 201 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF705GA8MUZ8 300 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 HRKO00198 91 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CHEK1O14757 476 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 TPST1O60507 370 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 YPEL1O60688 119 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 PRH1P02810 166 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 AMY2AP04746 511 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CD200P41217 278 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 NANOS3P60323 173 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 FADDQ13158 208 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 Q6ZN92 141 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MSANTD1Q6ZTZ1 278 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ADAT3Q96EY9 351 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 OR2M2Q96R28 347 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 SMIM2Q9BVW6 85 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 C19orf12Q9NSK7 152 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 JKAMPQ9P055 326 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 EXTL2Q9UBQ6 330 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CBY1Q9Y3M2 126 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF706Q9Y5V0 76 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 COL5A3P25940 1745 aaPredicted RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 LOC285095A0A1B0GVY8 99 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ADARB2-AS1A8MUL3 147 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 A8MXK9 166 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 FADS2O95864 444 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TPT1P13693 172 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ELK1P19419 428 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 PSMB9P28065 219 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 SSTR5P35346 364 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 B3GALT5-AS1P59052 145 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CXCR4P61073 352 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 PSME3P61289 254 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TEDDM1Q5T9Z0 273 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM200BQ69YZ2 307 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 C9orf139Q6ZV77 190 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF555Q8NEP9 628 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 OR8J3Q8NGG0 315 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 SCGB1C1Q8TD33 95 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TRIM63Q969Q1 353 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 HYLS1Q96M11 299 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 C5orf66Q9H5L9 145 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 COMMD3Q9UBI1 195 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ATPIF1Q9UII2 106 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAV18A0A075B6X5 111 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHV1-3A0A0C4DH29 117 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1W2PPR1 153 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A1W2PPV4 95 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 FBLL1A6NHQ2 334 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 WISP2O76076 250 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 BGLAPP02818 100 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 HRH1P35367 487 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 AKR1C3P42330 323 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CAMLGP49069 296 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 LSM6P62312 80 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 NDPQ00604 133 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 MPV17L2Q567V2 206 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 OR2G6Q5TZ20 316 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 MORN5Q5VZ52 161 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CFAP77Q6ZQR2 320 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CYS1Q717R9 158 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF781Q8N8C0 355 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 OR51E1Q8TCB6 317 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 C17orf50Q8WW18 174 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 HIGD2AQ9BW72 106 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 PARP12Q9H0J9 701 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ZFAND3Q9H8U3 227 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 SRRM4A7MD48 611 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ODF3BA8MYP8 253 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 DHRS3O75911 302 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 IL4P05112 153 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 MRPL3P09001 348 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CFC1BP0CG36 223 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 CAPGP40121 348 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 PTGDSP41222 190 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TAS2R46P59540 309 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL18Q07020 188 aaKnown RBP2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 PRICKLE4Q2TBC4 344 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms