RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 J3QW42 95 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 UBE2L3P68036 154 aaKnown RBP17.05■□□□□ 0.32
CTCF-202ENST00000401394 RNASE8Q8TDE3 154 aaKnown RBP17.05■□□□□ 0.32
CTCF-202ENST00000401394 FOXA2Q9Y261 457 aaPredicted RBP17.05■□□□□ 0.32
CTCF-202ENST00000401394 F2RL2O00254 374 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 SFTPCP11686 197 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 DLX1P56177 255 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 RNASEKQ6P5S7 137 aaKnown RBP17.05■□□□□ 0.32
CTCF-202ENST00000401394 SLC25A2Q9BXI2 301 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 TIMM8BQ9Y5J9 83 aaPredicted RBP17.05■□□□□ 0.32
CTCF-202ENST00000401394 ZNF891A8MT65 544 aaPredicted RBP17.04■□□□□ 0.32
CTCF-202ENST00000401394 AMY1AP04745 511 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 SAA1P0DJI8 122 aaPredicted RBP17.04■□□□□ 0.32
CTCF-202ENST00000401394 OR4B1Q8NGF8 309 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 SLC35D1Q9NTN3 355 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 PCP4P48539 62 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 PRRX1P54821 245 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 BLNKQ8WV28 456 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 FAM167A-AS1Q96KT0 104 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 SLC25A33Q9BSK2 321 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 TOX4O94842 621 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 TCF24Q7RTU0 167 aa17.04■□□□□ 0.32
CTCF-202ENST00000401394 LRBAP50851 2863 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 DSCAML1Q8TD84 2053 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 CGB3P0DN86 165 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 CGB7P0DN87 165 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 NUP35Q8NFH5 326 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 ZFP30Q9Y2G7 519 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 SELENOKQ9Y6D0 94 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 CD59P13987 128 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 PPOXP50336 477 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 LINC00322Q6ZN03 302 aaPredicted RBP17.03■□□□□ 0.32
CTCF-202ENST00000401394 FER1L6-AS2Q96M78 137 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 OSTCQ9NRP0 149 aa17.03■□□□□ 0.32
CTCF-202ENST00000401394 SMIM27A0A1W2PRY6 76 aa17.02■□□□□ 0.32
CTCF-202ENST00000401394 LEMD1Q68G75 181 aa17.02■□□□□ 0.32
CTCF-202ENST00000401394 FNDC4Q9H6D8 234 aaPredicted RBP17.02■□□□□ 0.32
CTCF-202ENST00000401394 ASH1LQ9NR48 2969 aaKnown RBP17.02■□□□□ 0.32
CTCF-202ENST00000401394 KBTBD11-OT1A0A1B0GTJ5 212 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 ZNF138P52744 262 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 GAGE1Q13065 139 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 NUDT10Q8NFP7 164 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 OR2D3Q8NGH3 330 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 NUDT11Q96G61 164 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 BSNQ9UPA5 3926 aa17.02■□□□□ 0.31
CTCF-202ENST00000401394 FAM90A9PA6NNJ1 464 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 H0Y8G0 127 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 RNASE2P10153 161 aaKnown RBP17.01■□□□□ 0.31
CTCF-202ENST00000401394 CCL3L1P16619 93 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 PATE2Q6UY27 113 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 ZC2HC1AQ96GY0 325 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 ZNF331Q9NQX6 463 aaPredicted RBP17.01■□□□□ 0.31
CTCF-202ENST00000401394 UQCR10Q9UDW1 63 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 IGLL1P15814 213 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 BORCS7Q96B45 105 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 TMEM167BQ9NRX6 74 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 AKAP13Q12802 2813 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 DCHS2Q6V1P9 2916 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 CDX4O14627 284 aaPredicted RBP17.01■□□□□ 0.31
CTCF-202ENST00000401394 ZNF137PP52743 207 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 GUSBP1Q15486 140 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 NPIPB3Q92617 1050 aa17.01■□□□□ 0.31
CTCF-202ENST00000401394 AMMECR1Q9Y4X0 333 aaPredicted RBP17.01■□□□□ 0.31
CTCF-202ENST00000401394 UPK2O00526 184 aa17■□□□□ 0.31
CTCF-202ENST00000401394 MOSP00540 346 aa17■□□□□ 0.31
CTCF-202ENST00000401394 C8orf88P0DMB2 117 aa17■□□□□ 0.31
CTCF-202ENST00000401394 TSPOP30536 169 aa17■□□□□ 0.31
CTCF-202ENST00000401394 OR10J3Q5JRS4 329 aa17■□□□□ 0.31
CTCF-202ENST00000401394 TMEM178AQ8NBL3 297 aa17■□□□□ 0.31
CTCF-202ENST00000401394 RITA1Q96K30 269 aa17■□□□□ 0.31
CTCF-202ENST00000401394 MRPL20Q9BYC9 149 aaKnown RBP17■□□□□ 0.31
CTCF-202ENST00000401394 GSX1Q9H4S2 264 aaPredicted RBP17■□□□□ 0.31
CTCF-202ENST00000401394 M0R2Z0 102 aa17■□□□□ 0.31
CTCF-202ENST00000401394 HSBP1O75506 76 aa17■□□□□ 0.31
CTCF-202ENST00000401394 PRCDQ00LT1 54 aa17■□□□□ 0.31
CTCF-202ENST00000401394 URB1-AS1Q96HZ7 61 aa17■□□□□ 0.31
CTCF-202ENST00000401394 PMCHL2Q9BQD1 86 aa17■□□□□ 0.31
CTCF-202ENST00000401394 ZNF71Q9NQZ8 489 aaPredicted RBP17■□□□□ 0.31
CTCF-202ENST00000401394 DKK4Q9UBT3 224 aa17■□□□□ 0.31
CTCF-202ENST00000401394 TRAV9-1A0A075B6T8 112 aa16.99■□□□□ 0.31
CTCF-202ENST00000401394 HIGD1CA8MV81 97 aa16.99■□□□□ 0.31
CTCF-202ENST00000401394 SEM1Q6ZVN7 128 aa16.99■□□□□ 0.31
CTCF-202ENST00000401394 TPSG1Q9NRR2 321 aa16.99■□□□□ 0.31
CTCF-202ENST00000401394 MBNL2Q5VZF2 373 aaKnown RBP16.99■□□□□ 0.31
CTCF-202ENST00000401394 WDR73Q6P4I2 378 aa16.99■□□□□ 0.31
CTCF-202ENST00000401394 RAI1Q7Z5J4 1906 aaPredicted RBP16.99■□□□□ 0.31
CTCF-202ENST00000401394 IGLV1-44P01699 117 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 PTTG1IPP53801 180 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 LY96Q9Y6Y9 160 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 IGHV3-72A0A0B4J1Y9 119 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 IZUMO1RA6ND01 250 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 FAM181BA6NEQ2 426 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 CCL8P80075 99 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 TNFRSF19Q9NS68 423 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 SLC25A10Q9UBX3 287 aaPredicted RBP16.98■□□□□ 0.31
CTCF-202ENST00000401394 ORM2P19652 201 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 WT1-ASQ06250 92 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 FOXE3Q13461 319 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 STUMQ69YW2 141 aa16.98■□□□□ 0.31
CTCF-202ENST00000401394 BHLHA15Q7RTS1 189 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms