RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PINX1Q96BK5 328 aaKnown RBP21.4■■□□□ 1.02
HMGB1-205ENST00000399494 SRD5A3Q9H8P0 318 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 C2orf70A6NJV1 201 aa21.39■■□□□ 1.01
HMGB1-205ENST00000399494 K7EIM0 57 aa21.39■■□□□ 1.01
HMGB1-205ENST00000399494 ZNF846Q147U1 533 aa21.39■■□□□ 1.01
HMGB1-205ENST00000399494 Q56UQ5 140 aa21.39■■□□□ 1.01
HMGB1-205ENST00000399494 DYNLRB2Q8TF09 96 aa21.39■■□□□ 1.01
HMGB1-205ENST00000399494 HEYLQ9NQ87 328 aaPredicted RBP21.39■■□□□ 1.01
HMGB1-205ENST00000399494 OR2T8A6NH00 312 aa21.38■■□□□ 1.01
HMGB1-205ENST00000399494 GUCA2BQ16661 112 aa21.38■■□□□ 1.01
HMGB1-205ENST00000399494 FAM106AQ4KMX7 169 aa21.38■■□□□ 1.01
HMGB1-205ENST00000399494 OR1S1Q8NH92 325 aa21.38■■□□□ 1.01
HMGB1-205ENST00000399494 TECRQ9NZ01 308 aaKnown RBP21.38■■□□□ 1.01
HMGB1-205ENST00000399494 LGALS9O00182 355 aa21.37■■□□□ 1.01
HMGB1-205ENST00000399494 TGOLN2O43493 480 aa21.37■■□□□ 1.01
HMGB1-205ENST00000399494 MT-CO2P00403 227 aa21.37■■□□□ 1.01
HMGB1-205ENST00000399494 GPHB5Q86YW7 130 aa21.37■■□□□ 1.01
HMGB1-205ENST00000399494 LRTM2Q8N967 370 aa21.37■■□□□ 1.01
HMGB1-205ENST00000399494 WDR89Q96FK6 387 aaPredicted RBP21.37■■□□□ 1.01
HMGB1-205ENST00000399494 BSCL2Q96G97 398 aaPredicted RBP21.37■■□□□ 1.01
HMGB1-205ENST00000399494 A0A1B0GU03 582 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 ZNF320A2RRD8 509 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 C9orf170A2RU37 121 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 CORTO00230 105 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 RNASE2P10153 161 aaKnown RBP21.36■■□□□ 1.01
HMGB1-205ENST00000399494 C4orf46Q504U0 113 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 ATP6V0BQ99437 205 aa21.36■■□□□ 1.01
HMGB1-205ENST00000399494 I3L2K1 104 aa21.35■■□□□ 1.01
HMGB1-205ENST00000399494 OR4E1P0C645 316 aa21.35■■□□□ 1.01
HMGB1-205ENST00000399494 ANXA7P20073 488 aaKnown RBP21.35■■□□□ 1.01
HMGB1-205ENST00000399494 C20orf85Q9H1P6 137 aa21.35■■□□□ 1.01
HMGB1-205ENST00000399494 TMED3Q9Y3Q3 217 aa21.35■■□□□ 1.01
HMGB1-205ENST00000399494 IGHV3-35A0A0C4DH35 117 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 HTR2BP41595 481 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 MFAP4P55083 255 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 TNFRSF9Q07011 255 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 SPSB3Q6PJ21 355 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 COQ8AQ8NI60 647 aa21.34■■□□□ 1.01
HMGB1-205ENST00000399494 IGHV3-48P01763 117 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 HOXB5P09067 269 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 CBLN1P23435 193 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 DHRS2Q13268 280 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 MZT2BQ6NZ67 158 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 LYG2Q86SG7 212 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 HSPB7Q9UBY9 170 aa21.33■■□□□ 1.01
HMGB1-205ENST00000399494 ALMS1Q8TCU4 4167 aa21.33■■□□□ 1
HMGB1-205ENST00000399494 TCRBP04435 133 aa21.32■■□□□ 1
HMGB1-205ENST00000399494 TXN2Q99757 166 aa21.32■■□□□ 1
HMGB1-205ENST00000399494 SELENOKQ9Y6D0 94 aa21.32■■□□□ 1
HMGB1-205ENST00000399494 OPRK1P41145 380 aa21.31■■□□□ 1
HMGB1-205ENST00000399494 SLC24A4Q8NFF2 622 aa21.31■■□□□ 1
HMGB1-205ENST00000399494 CACNG8Q8WXS5 425 aa21.31■■□□□ 1
HMGB1-205ENST00000399494 RBKSQ9H477 322 aa21.31■■□□□ 1
HMGB1-205ENST00000399494 TRAV6A0A075B6T7 132 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 FAM240BA0A1B0GVZ2 78 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 F8W735 103 aaPredicted RBP21.3■■□□□ 1
HMGB1-205ENST00000399494 NUPL2O15504 423 aaKnown RBP21.3■■□□□ 1
HMGB1-205ENST00000399494 GNG7O60262 68 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 UPK1BO75841 260 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 SLC25A6P12236 298 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 BSXQ3C1V8 233 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 SLC16A13Q7RTY0 426 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 DUSP18Q8NEJ0 188 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 DTD1Q8TEA8 209 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 CHRDL1Q9BU40 450 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 NUDT15Q9NV35 164 aa21.3■■□□□ 1
HMGB1-205ENST00000399494 GGNBP1Q5YKI7 109 aa21.29■■□□□ 1
HMGB1-205ENST00000399494 TMEM61Q8N0U2 210 aa21.29■■□□□ 1
HMGB1-205ENST00000399494 ZNF436Q9C0F3 470 aaPredicted RBP21.29■■□□□ 1
HMGB1-205ENST00000399494 MLXQ9UH92 298 aa21.29■■□□□ 1
HMGB1-205ENST00000399494 TBC1D24Q9ULP9 559 aa21.29■■□□□ 1
HMGB1-205ENST00000399494 A8MWP6 167 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 IFNA10P01566 189 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 NPY1RP25929 384 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 FCGR2BP31994 310 aaPredicted RBP21.28■■□□□ 1
HMGB1-205ENST00000399494 NPBWR1P48145 328 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 ASAH1Q13510 395 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 C2orf83Q53S99 150 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 PVRIGQ6DKI7 326 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 UNQ9165/PRO28630Q6UXU0 137 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 NOXA1Q86UR1 476 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 OVOL2Q9BRP0 275 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 UFC1Q9Y3C8 167 aa21.28■■□□□ 1
HMGB1-205ENST00000399494 TMEM213A2RRL7 107 aa21.27■■□□□ 1
HMGB1-205ENST00000399494 IFNA21P01568 189 aa21.27■■□□□ 1
HMGB1-205ENST00000399494 ADMP35318 185 aa21.27■■□□□ 1
HMGB1-205ENST00000399494 RELQ04864 619 aaPredicted RBP21.27■■□□□ 1
HMGB1-205ENST00000399494 UXS1Q8NBZ7 420 aa21.27■■□□□ 1
HMGB1-205ENST00000399494 RPS10-NUDT3A0A1W2PQS6 291 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 NDUFA4O00483 81 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 PITX3O75364 302 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 ADAP1O75689 374 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 CTSGP08311 255 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 TMEM190Q8WZ59 177 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 C20orf24Q9BUV8 137 aa21.26■□□□□ 0.99
HMGB1-205ENST00000399494 FAM90A26D6RGX4 464 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 MED6O75586 246 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 TM4SF20Q53R12 229 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 OR52B4Q8NGK2 314 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 ENKURQ8TC29 256 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms