RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 TMEM249Q2WGJ8 235 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 MS4A6AQ9H2W1 248 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 LOXL4Q96JB6 756 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 ZNF479Q96JC4 524 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 CFHR5Q9BXR6 569 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 SBF2Q86WG5 1849 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 SBF1O95248 1867 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 ERG28Q9UKR5 140 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 KBTBD11-OT1A0A1B0GTJ5 212 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 TBX6O95947 436 aaPredicted RBP11.76□□□□□ -0.53
COL4A3-202ENST00000396578 EVI2AP22794 236 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 ZNF362Q5T0B9 420 aaPredicted RBP11.76□□□□□ -0.53
COL4A3-202ENST00000396578 PEMTQ9UBM1 199 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 C12orf77C9JDV5 145 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 ATRAIDQ6UW56 229 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 ZNF525Q8N782 197 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 C18orf12Q96KH6 178 aa11.76□□□□□ -0.53
COL4A3-202ENST00000396578 TAF1LQ8IZX4 1826 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 COL24A1Q17RW2 1714 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 LINC01559Q495D7 138 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 C1QL2Q7Z5L3 287 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 OSTCQ9NRP0 149 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 F2Z2F3 143 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 CD28P10747 220 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 STHQ8IWL8 128 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 CITED2Q99967 270 aaPredicted RBP11.75□□□□□ -0.53
COL4A3-202ENST00000396578 S100A7L2Q5SY68 101 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 TMEM167AQ8TBQ9 72 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 MYOD1P15172 320 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 GNG5P63218 68 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H4AP62805 103 aaKnown RBP11.75□□□□□ -0.53
COL4A3-202ENST00000396578 CDCP2Q5VXM1 449 aa11.75□□□□□ -0.53
COL4A3-202ENST00000396578 GFI1BQ5VTD9 330 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 TRPM7Q96QT4 1865 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 COL5A3P25940 1745 aaPredicted RBP11.74□□□□□ -0.53
COL4A3-202ENST00000396578 TRAV14DV4A0A0A6YYC5 116 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 TDGF1P3P51864 188 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 SLC50A1Q9BRV3 221 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 STPG1Q5TH74 334 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 MORN3Q6PF18 240 aaPredicted RBP11.74□□□□□ -0.53
COL4A3-202ENST00000396578 TMEM238C9JI98 176 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 LAGE3Q14657 143 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 ATP5L2Q7Z4Y8 100 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 CTHRC1Q96CG8 243 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 CDK2AP2O75956 126 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 TMEM144Q7Z5S9 345 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 EPDR1Q9UM22 224 aa11.74□□□□□ -0.53
COL4A3-202ENST00000396578 RNF222A6NCQ9 220 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 HS3ST3B1Q9Y662 390 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 HEPN1Q6WQI6 88 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 FAM90A1Q86YD7 464 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 MRPL20Q9BYC9 149 aaKnown RBP11.73□□□□□ -0.53
COL4A3-202ENST00000396578 TET1Q8NFU7 2136 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 OR9G4Q8NGQ1 327 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 GP6Q9HCN6 339 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 HTN3P15516 51 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 ZIC4Q8N9L1 334 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 IFI27L1Q96BM0 104 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 CST9LQ9H4G1 147 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 TRAV8-1A0A0A6YYK1 113 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 C15orf61A6NNL5 157 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 SMIM10L1P0DMW3 83 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 GLMPQ8WWB7 406 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 SMIM10Q96HG1 83 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 VGLL1Q99990 258 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 SPTBN2O15020 2390 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BLQ99880 126 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 EDA2RQ9HAV5 297 aa11.73□□□□□ -0.53
COL4A3-202ENST00000396578 NAPSAO96009 420 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 C1QTNF9P0C862 333 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 HELZP42694 1942 aaKnown RBP11.72□□□□□ -0.53
COL4A3-202ENST00000396578 EFEMP2O95967 443 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 PVRIGQ6DKI7 326 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 DTX2Q86UW9 622 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 GATA2P23769 480 aaPredicted RBP11.72□□□□□ -0.53
COL4A3-202ENST00000396578 SMPXQ9UHP9 88 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 FOXD3Q9UJU5 478 aaPredicted RBP11.72□□□□□ -0.53
COL4A3-202ENST00000396578 LINC00312Q9Y6C7 94 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 TCRBV4S1A1TA0A5B7 111 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 WDR81Q562E7 1941 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 PRR32B1ATL7 298 aa11.72□□□□□ -0.53
COL4A3-202ENST00000396578 IGHV3-64A0A075B6Q5 118 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 ADARB2-AS1A8MUL3 147 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 GATD1Q8NB37 220 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 RNF126Q9BV68 326 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 DPH3P1Q9H4G8 78 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 IGHV3OR16-8A0A075B7F1 116 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.71□□□□□ -0.53
COL4A3-202ENST00000396578 A0A0G2JK05 382 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 TNFSF13O75888 250 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 PCOLCEQ15113 449 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 SLC25A45Q8N413 288 aa11.71□□□□□ -0.53
COL4A3-202ENST00000396578 NEU4Q8WWR8 484 aaPredicted RBP11.71□□□□□ -0.53
COL4A3-202ENST00000396578 TOMM40O96008 361 aa11.71□□□□□ -0.54
COL4A3-202ENST00000396578 GZMBP10144 247 aa11.71□□□□□ -0.54
COL4A3-202ENST00000396578 C1QTNF5Q9BXJ0 243 aa11.71□□□□□ -0.54
COL4A3-202ENST00000396578 TRAV5A0A0B4J249 113 aa11.71□□□□□ -0.54
COL4A3-202ENST00000396578 A6NNC1 897 aa11.71□□□□□ -0.54
COL4A3-202ENST00000396578 GFRA3O60609 400 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms