RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GNG7O60262 68 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 LY86O95711 162 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 IFNA21P01568 189 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 H2AFB2P0C5Z0 115 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 FOLR2P14207 255 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 ELLP55199 621 aaPredicted RBP16.48■□□□□ 0.23
CLN3-207ENST00000395653 DCTN2Q13561 401 aaKnown RBP16.48■□□□□ 0.23
CLN3-207ENST00000395653 OR52B4Q8NGK2 314 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 TMEM170AQ8WVE7 144 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 FNDC4Q9H6D8 234 aaPredicted RBP16.48■□□□□ 0.23
CLN3-207ENST00000395653 UFC1Q9Y3C8 167 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 RPS10-NUDT3A0A1W2PQS6 291 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 MED6O75586 246 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 GP9P14770 177 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 ATP5IP56385 69 aaPredicted RBP16.47■□□□□ 0.23
CLN3-207ENST00000395653 RELQ04864 619 aaPredicted RBP16.47■□□□□ 0.23
CLN3-207ENST00000395653 C11orf87Q6NUJ2 197 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 OR2K2Q8NGT1 345 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 ENKURQ8TC29 256 aa16.47■□□□□ 0.23
CLN3-207ENST00000395653 IFNA10P01566 189 aa16.46■□□□□ 0.23
CLN3-207ENST00000395653 CBLN1P23435 193 aa16.46■□□□□ 0.23
CLN3-207ENST00000395653 LCN12Q6JVE5 192 aa16.46■□□□□ 0.23
CLN3-207ENST00000395653 MARC2Q969Z3 335 aa16.46■□□□□ 0.23
CLN3-207ENST00000395653 EDN2P20800 178 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 OR4X1Q8NH49 305 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 DYNLRB2Q8TF09 96 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 ZNF431Q8TF32 576 aaPredicted RBP16.45■□□□□ 0.22
CLN3-207ENST00000395653 CIB3Q96Q77 187 aaPredicted RBP16.45■□□□□ 0.22
CLN3-207ENST00000395653 TECRQ9NZ01 308 aaKnown RBP16.45■□□□□ 0.22
CLN3-207ENST00000395653 SORL1Q92673 2214 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 MPTX1A8MV57 137 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 TMEM50AO95807 157 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 SLC25A4P12235 298 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 TM4SF20Q53R12 229 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 DEFB121Q5J5C9 76 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 CACNG8Q8WXS5 425 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 ZNF414Q96IQ9 312 aa16.45■□□□□ 0.22
CLN3-207ENST00000395653 DAZ1Q9NQZ3 744 aaKnown RBP16.45■□□□□ 0.22
CLN3-207ENST00000395653 LSM4Q9Y4Z0 139 aaKnown RBP16.45■□□□□ 0.22
CLN3-207ENST00000395653 SYNGR2O43760 224 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 CLN5O75503 358 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 C8orf88P0DMB2 117 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 MLANAQ16655 118 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 DEFB114Q30KQ6 69 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 ETFRF1Q6IPR1 90 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 UXS1Q8NBZ7 420 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 SEC22CQ9BRL7 303 aa16.44■□□□□ 0.22
CLN3-207ENST00000395653 MRPL36Q9P0J6 103 aaKnown RBP16.44■□□□□ 0.22
CLN3-207ENST00000395653 MRPL27Q9P0M9 148 aaKnown RBP16.44■□□□□ 0.22
CLN3-207ENST00000395653 C15orf62A8K5M9 175 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 K7EMT4 169 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 SCGB2A1O75556 95 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 DEFA1P59665 94 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 DEFA3P59666 94 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 ID3Q02535 119 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 CD300EQ496F6 205 aaPredicted RBP16.43■□□□□ 0.22
CLN3-207ENST00000395653 PRSS54Q6PEW0 395 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 OR4D5Q8NGN0 318 aa16.43■□□□□ 0.22
CLN3-207ENST00000395653 IL5P05113 134 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 IAPPP10997 89 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 NRARPQ7Z6K4 114 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 TMEM116Q8NCL8 245 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 OR10C1Q96KK4 312 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 C20orf24Q9BUV8 137 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 MAGT1Q9H0U3 335 aa16.42■□□□□ 0.22
CLN3-207ENST00000395653 TGP01266 2768 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 TRAV30A0A087WSZ9 112 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 IZUMO1RA6ND01 250 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 IFNA4P05014 189 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 NKX2-1P43699 371 aaPredicted RBP16.41■□□□□ 0.22
CLN3-207ENST00000395653 CD69Q07108 199 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 IAH1Q2TAA2 248 aaPredicted RBP16.41■□□□□ 0.22
CLN3-207ENST00000395653 ZNF600Q6ZNG1 722 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 C12orf45Q8N5I9 185 aaPredicted RBP16.41■□□□□ 0.22
CLN3-207ENST00000395653 MLXQ9UH92 298 aa16.41■□□□□ 0.22
CLN3-207ENST00000395653 WRBO00258 174 aa16.4■□□□□ 0.22
CLN3-207ENST00000395653 YIF1AO95070 293 aa16.4■□□□□ 0.22
CLN3-207ENST00000395653 RAB11AP62491 216 aa16.4■□□□□ 0.22
CLN3-207ENST00000395653 RPP30P78346 268 aaKnown RBP16.4■□□□□ 0.22
CLN3-207ENST00000395653 RND2P52198 227 aa16.39■□□□□ 0.21
CLN3-207ENST00000395653 BTNL8Q6UX41 500 aa16.39■□□□□ 0.21
CLN3-207ENST00000395653 SLC16A13Q7RTY0 426 aa16.39■□□□□ 0.21
CLN3-207ENST00000395653 ZBTB8BQ8NAP8 495 aaPredicted RBP16.39■□□□□ 0.21
CLN3-207ENST00000395653 GINS3Q9BRX5 216 aa16.39■□□□□ 0.21
CLN3-207ENST00000395653 SMAD5-AS1Q9Y6J3 95 aa16.39■□□□□ 0.21
CLN3-207ENST00000395653 IGHV3OR16-8A0A075B7F1 116 aa16.38■□□□□ 0.21
CLN3-207ENST00000395653 IGLC1P0CG04 106 aa16.38■□□□□ 0.21
CLN3-207ENST00000395653 GPX4P36969 197 aaPredicted RBP16.38■□□□□ 0.21
CLN3-207ENST00000395653 POLR2GP62487 172 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-207ENST00000395653 TOMM20LQ6UXN7 152 aa16.38■□□□□ 0.21
CLN3-207ENST00000395653 OR1S2Q8NGQ3 325 aa16.38■□□□□ 0.21
CLN3-207ENST00000395653 PUS1Q9Y606 427 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-207ENST00000395653 CCSO14618 274 aa16.37■□□□□ 0.21
CLN3-207ENST00000395653 IGKV1-17P01599 117 aa16.37■□□□□ 0.21
CLN3-207ENST00000395653 TMEM61Q8N0U2 210 aa16.37■□□□□ 0.21
CLN3-207ENST00000395653 Q8N1Y9 231 aa16.37■□□□□ 0.21
CLN3-207ENST00000395653 ZFAND3Q9H8U3 227 aa16.37■□□□□ 0.21
CLN3-207ENST00000395653 GPN1Q9HCN4 374 aaPredicted RBP16.37■□□□□ 0.21
CLN3-207ENST00000395653 TRAV25A0A0B4J276 109 aa16.36■□□□□ 0.21
CLN3-207ENST00000395653 ZNF785A8K8V0 405 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms