RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 OR9G9P0C7N8 305 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 RPP30P78346 268 aaKnown RBP11.58□□□□□ -0.56
HMGA1-203ENST00000374116 RPL39P5Q59GN2 51 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 OR52E5Q8NH55 327 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 CORO2AQ92828 525 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 SLC35E1Q96K37 410 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 TLN2Q9Y4G6 2542 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 TOMM40O96008 361 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 TMEM249Q2WGJ8 235 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 PDLIM3Q53GG5 364 aaPredicted RBP11.58□□□□□ -0.56
HMGA1-203ENST00000374116 PRAMEF5Q5TYX0 476 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 LCN15Q6UWW0 184 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 Q71RC1 249 aaPredicted RBP11.58□□□□□ -0.56
HMGA1-203ENST00000374116 OR4A16Q8NH70 328 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 DDB2Q92466 427 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 ELOVL1Q9BW60 279 aa11.58□□□□□ -0.56
HMGA1-203ENST00000374116 F8P00451 2351 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 MALRD1Q5VYJ5 2156 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 TNFRSF13BO14836 293 aaPredicted RBP11.57□□□□□ -0.56
HMGA1-203ENST00000374116 ZFP36P26651 326 aaKnown RBP11.57□□□□□ -0.56
HMGA1-203ENST00000374116 TPPP2P59282 170 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 LOXL1Q08397 574 aaPredicted RBP11.57□□□□□ -0.56
HMGA1-203ENST00000374116 TMEM155Q4W5P6 130 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 CT45A1Q5HYN5 189 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 TOMM20LQ6UXN7 152 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 OR4B1Q8NGF8 309 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 OR4S2Q8NH73 311 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 CT45A3Q8NHU0 189 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 RNASE8Q8TDE3 154 aaKnown RBP11.57□□□□□ -0.56
HMGA1-203ENST00000374116 PATZ1Q9HBE1 687 aaKnown RBP11.57□□□□□ -0.56
HMGA1-203ENST00000374116 SLC39A9Q9NUM3 307 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 IDI2-AS1Q9NZ38 188 aa11.57□□□□□ -0.56
HMGA1-203ENST00000374116 PPBPP02775 128 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 IL3RAP26951 378 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 THBS3P49746 956 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 YPEL3P61236 119 aaPredicted RBP11.56□□□□□ -0.56
HMGA1-203ENST00000374116 UTF1Q5T230 341 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 NECAP1Q8NC96 275 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 OR2D3Q8NGH3 330 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 CMTM2Q8TAZ6 248 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 ADTRPQ96IZ2 230 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 VAMP8Q9BV40 100 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 PARLQ9H300 379 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 MANBALQ9NQG1 85 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 WNK2Q9Y3S1 2297 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 C20orf202A1L168 122 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 C15orf62A8K5M9 175 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 C17orf112F2Z3M2 114 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 IGHV3-7P01780 117 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 IGHV4-31P0DP07 118 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 FGF8P55075 233 aaPredicted RBP11.56□□□□□ -0.56
HMGA1-203ENST00000374116 FOXL1Q12952 345 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 ZNF841Q6ZN19 808 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 RPP25LQ8N5L8 163 aaKnown RBP11.56□□□□□ -0.56
HMGA1-203ENST00000374116 ZNF709Q8N972 641 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 TMUB1Q9BVT8 246 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 SLC45A2Q9UMX9 530 aa11.56□□□□□ -0.56
HMGA1-203ENST00000374116 RELBQ01201 579 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 SPINK9Q5DT21 86 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 ACSM6Q6P461 480 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 C1orf229Q6ZS94 237 aaPredicted RBP11.55□□□□□ -0.56
HMGA1-203ENST00000374116 Q6ZWC4 215 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 TMEM256Q8N2U0 113 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 ZNF439Q8NDP4 499 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 OR8B3Q8NGG8 313 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 LHX4Q969G2 390 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 OR8B2Q96RD0 313 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 NPCDR1Q9BY65 106 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 TMEM140Q9NV12 185 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 TRAPPC1Q9Y5R8 145 aa11.55□□□□□ -0.56
HMGA1-203ENST00000374116 SAA2-SAA4A0A096LPE2 208 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 CTXND1A0A1B0GTU2 59 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 hADV38S2A0JD32 116 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 IGKV1D-33P01593 117 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 IGKV1-33P01594 117 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 SAA2P0DJI9 122 aaPredicted RBP11.54□□□□□ -0.56
HMGA1-203ENST00000374116 PSMB3P49720 205 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 LEAP2Q969E1 77 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 NEIL1Q96FI4 390 aaPredicted RBP11.54□□□□□ -0.56
HMGA1-203ENST00000374116 SSBP3Q9BWW4 388 aaPredicted RBP11.54□□□□□ -0.56
HMGA1-203ENST00000374116 ZFHX3Q15911 3703 aa11.54□□□□□ -0.56
HMGA1-203ENST00000374116 TRAV9-1A0A075B6T8 112 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 TGFAP01135 160 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 CTRLP40313 264 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 VDAC2P45880 294 aaPredicted RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 COMPP49747 757 aaPredicted RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 KRTAP1-1Q07627 177 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 FFAR4Q5NUL3 377 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 OR10G9Q8NGN4 311 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 OR10G7Q8NGN6 311 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 HEYLQ9NQ87 328 aaPredicted RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.53□□□□□ -0.563e-11■■■■□ 21.4
HMGA1-203ENST00000374116 TEP1Q99973 2627 aaKnown RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 NUPR1O60356 82 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 MPDU1O75352 247 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 NDUFB8O95169 186 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 CD1BP29016 333 aa11.53□□□□□ -0.56
HMGA1-203ENST00000374116 RPS20P60866 119 aaKnown RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 MEF2CQ06413 473 aaPredicted RBP11.53□□□□□ -0.56
HMGA1-203ENST00000374116 PRSS8Q16651 343 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms