RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SPSB3Q6PJ21 355 aa8.21□□□□□ -1.1
CHD3-202ENST00000358181 CLDN16Q9Y5I7 305 aa8.21□□□□□ -1.1
CHD3-202ENST00000358181 PAX8Q06710 450 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 ORMDL3Q8N138 153 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 MTCL1Q9Y4B5 1905 aaKnown RBP8.2□□□□□ -1.1
CHD3-202ENST00000358181 PSG1P11464 419 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 MAP1BP46821 2468 aaKnown RBP8.2□□□□□ -1.1
CHD3-202ENST00000358181 NPIPB13A6NJU9 1138 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 NPIPB5A8MRT5 1133 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 H0YL77 283 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 PSPNO60542 156 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 RPL36AP83881 106 aaKnown RBP8.2□□□□□ -1.1
CHD3-202ENST00000358181 RPL36ALQ969Q0 106 aaKnown RBP8.2□□□□□ -1.1
CHD3-202ENST00000358181 FOXS1O43638 330 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 IGHG3P01860 377 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 GAS1P54826 345 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 SLC25A45Q8N413 288 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 ICE1Q9Y2F5 2266 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 C1QL1O75973 258 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 NBEAP1P0C6P0 100 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 CFHR1Q03591 330 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 KLF5Q13887 457 aaPredicted RBP8.2□□□□□ -1.1
CHD3-202ENST00000358181 DTX1Q86Y01 620 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 TCF19Q9Y242 345 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 USP54Q70EL1 1684 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 MMP23AO75900 390 aa8.2□□□□□ -1.1
CHD3-202ENST00000358181 RPL15P61313 204 aaKnown RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 PIP4P2Q8N4L2 257 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 IGKV2-40A0A087WW87 121 aaPredicted RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 MPTX1A8MV57 137 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 C5orf67F2Z3F1 127 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 IGKV2D-40P01614 121 aaPredicted RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 AGAP20933 346 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 GCHFRP30047 84 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 TNFRSF14Q92956 283 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 MSRB2Q9Y3D2 182 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 SRSF1Q07955 248 aaKnown RBP eCLIP8.19□□□□□ -1.1
CHD3-202ENST00000358181 NRN1Q9NPD7 142 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 VSIG8P0DPA2 414 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 CCL3L1P16619 93 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 H1FOOQ8IZA3 346 aaPredicted RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 FMC1Q96HJ9 113 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 MRPL32Q9BYC8 188 aaKnown RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 PRDM13Q9H4Q3 707 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 JPT1Q9UK76 154 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 DDTP30046 118 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 SVIPQ8NHG7 77 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 SCRT1Q9BWW7 348 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 C1QTNF4Q9BXJ3 329 aa8.19□□□□□ -1.1
CHD3-202ENST00000358181 SLIRPQ9GZT3 109 aaKnown RBP8.19□□□□□ -1.1
CHD3-202ENST00000358181 TRAV8-1A0A0A6YYK1 113 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 SCO2A0A1W2PP80 73 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 A0A1W2PQD3 144 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 CELA3AP09093 270 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 PAX9P55771 341 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 SLC25A39Q9BZJ4 359 aaPredicted RBP8.18□□□□□ -1.1
CHD3-202ENST00000358181 SP5Q6BEB4 398 aaPredicted RBP8.18□□□□□ -1.1
CHD3-202ENST00000358181 TMEM91Q6ZNR0 172 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 NDUFAF3Q9BU61 184 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 GAGE12JA6NER3 117 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 GAGE1Q13065 139 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 GAGE4Q13068 117 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 GAGE5Q13069 117 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 GAGE13Q4V321 117 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 ERG28Q9UKR5 140 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 NBR2O15453 112 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 TFF3Q07654 80 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 IGKV1-8A0A0C4DH67 115 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 CA11O75493 328 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 UMODP07911 640 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 RNF166Q96A37 237 aaPredicted RBP8.18□□□□□ -1.1
CHD3-202ENST00000358181 SERF2P84101 59 aa8.18□□□□□ -1.1
CHD3-202ENST00000358181 TIAF1O95411 115 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 SLC25A38Q96DW6 304 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 TPRP12270 2363 aaKnown RBP8.17□□□□□ -1.1
CHD3-202ENST00000358181 A0A087WWL8 130 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 PMVKQ15126 192 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 TEX43Q6ZNM6 134 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 RASL10AQ92737 203 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 MARVELD1Q9BSK0 173 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 PILRBQ9UKJ0 227 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 KNCNA6PVL3 124 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 XCL2Q9UBD3 114 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 A0A0J9YY99 117 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 HAMPP81172 84 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 GAGE2BQ13066 116 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 WFDC6Q9BQY6 131 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 A0A1W2PPI3 338 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 RNASE6Q93091 150 aaKnown RBP8.17□□□□□ -1.1
CHD3-202ENST00000358181 GDF15Q99988 308 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 NCOR1P1Q9H4R4 102 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 DLEC1Q9Y238 1755 aa8.17□□□□□ -1.1
CHD3-202ENST00000358181 APCDD1LQ8NCL9 501 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 ZNF501Q96CX3 271 aaPredicted RBP8.16□□□□□ -1.1
CHD3-202ENST00000358181 ASCL2Q99929 193 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 SPXQ9BT56 116 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 LINC00587B1AMM8 73 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 SEC61GP60059 68 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 IGFL4Q6B9Z1 124 aa8.16□□□□□ -1.1
CHD3-202ENST00000358181 MIR17HGQ75NE6 70 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms