RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MPLKIPQ8TAP9 179 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 NARS2Q96I59 477 aaKnown RBP1.8□□□□□ -2.12
VPS54-202ENST00000354504 DERL1Q9BUN8 251 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 SDF2L1Q9HCN8 221 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 COMMD9Q9P000 198 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 PSG11Q9UQ72 335 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 PPP1R3CQ9UQK1 317 aa1.8□□□□□ -2.12
VPS54-202ENST00000354504 CLPSL1A2RUU4 121 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 J3QR06 171 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 M0R1B8 84 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CST7O76096 145 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CLDN1O95832 211 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 STAG3L2P0CL84 134 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 STAG3L3P0CL85 134 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 AREGP15514 252 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 PLP1P60201 277 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 S100A10P60903 97 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 MRPS11P82912 194 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 MEF2CQ06413 473 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 BTN1A1Q13410 526 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 KIAA0141Q14154 515 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 GAMTQ14353 236 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 C2orf83Q53S99 150 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 COA6Q5JTJ3 125 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 GDF5OSQ5U4N7 250 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 LINC00322Q6ZN03 302 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 MEX3BQ6ZN04 569 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 OR51H1Q8NH63 302 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RNASE11Q8TAA1 199 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 LRRC20Q8TCA0 184 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CCL13Q99616 98 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 HSD17B10Q99714 261 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 MRPL20Q9BYC9 149 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 SMDT1Q9H4I9 107 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 DOPEY1Q5JWR5 2465 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 LINC01548A6NM66 108 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GGTLC3B5MD39 225 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 LYNX1G3V0Z9 82 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 DVL1O14640 695 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 NDUFS7O75251 213 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 LY6HO94772 140 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 HPRT1P00492 218 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CRYABP02511 175 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 TYMSP04818 313 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 OR5G3P0C626 314 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 SAA1P0DJI8 122 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 LYNX1P0DP58 116 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GP9P14770 177 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 PTAFRP25105 342 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 NUP62P37198 522 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 NKX2-1P43699 371 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 RAB14P61106 215 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 SRPXP78539 464 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 FHL2Q14192 279 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 EDDM3AQ14507 147 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GUK1Q16774 197 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 SMIM21Q3B7S5 101 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RNF212Q495C1 297 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 AKIRIN2Q53H80 203 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GPHB5Q86YW7 130 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 LINC00518Q8N0U6 118 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 COMMD1Q8N668 190 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CYB561D1Q8N8Q1 229 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GATD1Q8NB37 220 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 OR5R1Q8NH85 324 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 THAP6Q8TBB0 222 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 TMEM167AQ8TBQ9 72 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GALMQ96C23 342 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 SCGB3A2Q96PL1 93 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RAB40CQ96S21 281 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 TBX15Q96SF7 602 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 PCGF1Q9BSM1 259 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 ZNF471Q9BX82 626 aaPredicted RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 SMIM3Q9BZL3 60 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CSTL1Q9H114 145 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 ZNF665Q9H7R5 613 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 TMEM106BQ9NUM4 274 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RNF7Q9UBF6 113 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 C14orf166Q9Y224 244 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 LSM5Q9Y4Y9 91 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 SMAD5-AS1Q9Y6J3 95 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 FAT3Q8TDW7 4589 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 C2CD3Q4AC94 2353 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 TRBV9A0A0B4J1U6 114 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 hCG_1809904A0A1W2PP81 198 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 A0A1W2PPE2 198 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 KANTRA0A1W2PQU2 76 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 A0A1W2PR64 198 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RBFOX3A6NFN3 312 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 C16orf97H3BN30 126 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 MKRN2OSH3BPM6 223 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 BUB1B-PAK6H3BSN5 160 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 K7EIM0 57 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 AGPAT2O15120 278 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 NUPR1O60356 82 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 NDUFB4O95168 129 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CRYBA1P05813 215 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 METTL15P1P0C7V9 234 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 CD99P14209 185 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 OPRK1P41145 380 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms