RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 MKXQ8IYA7 352 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TRAV9-2A0A087WT02 112 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LYNX1G3V0Z9 82 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 YPEL1O60688 119 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 CXorf1O96002 111 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LYNX1P0DP58 116 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 DUTP33316 252 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF93P35789 620 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 NDPQ00604 133 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 OR10X1Q8NGY0 326 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 DAZLQ92904 295 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 YPEL2Q96QA6 119 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A0A0B4J2E0 115 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 KIR2DS5A0A0G2JLQ3 304 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A0A0G2JNG1 304 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A0A1B0GX12 115 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LGALS3P17931 250 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 TDGF1P3P51864 188 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 KIR2DS5Q14953 304 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SAMD5Q5TGI4 173 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 HCP5Q6MZN7 132 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TEX43Q6ZNM6 134 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 RNF186Q9NXI6 227 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF443Q9Y2A4 671 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 KIR2DS2P43631 304 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TWIST1Q15672 202 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 GBGT1Q8N5D6 347 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 EDARADDQ8WWZ3 215 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 H1FXQ92522 213 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 NPIPB3Q92617 1050 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 APRG1Q8IVJ8 170 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 BADQ92934 168 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TP73-AS1Q9UF72 201 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SPATA31B1PQ5VZV4 182 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 ANKRD37Q7Z713 158 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 RNF152Q8N8N0 203 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF784Q8NCA9 323 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 PERPQ96FX8 193 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 KLF12Q9Y4X4 402 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 PRNTQ86SH4 94 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 DPRXA6NFQ7 191 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 H3BUT2 72 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 DXOO77932 396 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 HIST1H1AQ02539 215 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 COL10A1Q03692 680 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 DOLPP1Q86YN1 238 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 GNB2P62879 340 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 OR1N1Q8NGS0 311 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SLC25A10Q9UBX3 287 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 INSIG2Q9Y5U4 225 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 HSPE1P61604 102 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 C18orf15Q96N68 181 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 B9A039 149 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SERTAD4-AS1Q5TG53 156 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SGMS2Q8NHU3 365 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SLC25A22Q9H936 323 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 PEMTQ9UBM1 199 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 FOXA3P55318 350 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 OR8B12Q8NGG6 310 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TRBV6-6A0A0A6YYG2 114 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 M0R3E3 92 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 PTGESO14684 152 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 MIC13Q5XKP0 118 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LINC00173Q6ZV60 143 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SP9P0CG40 484 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 MRPS18CQ9Y3D5 142 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 R4GMQ9 66 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A0A0A6YYD5 115 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 NDUFB4O95168 129 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 P04436 131 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 FAHP16930 419 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 OR10S1Q8NGN2 331 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 A0A0G2JLM5 398 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 PSG5Q15238 335 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 VWC2Q2TAL6 325 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 AKAP13Q12802 2813 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 FN1P02751 2386 aaKnown RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 NPIPB5A8MRT5 1133 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 IGFBP3P17936 291 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 RPS23P62266 143 aaKnown RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 MRPL23Q16540 153 aaKnown RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF474Q6S9Z5 364 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 SRP19P09132 144 aaKnown RBP2.99□□□□□ -1.93
SYNE1-201ENST00000341594 LINC01619G3V211 115 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 ID3Q02535 119 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 ATP6V0E2Q8NHE4 81 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 RPEQ96AT9 228 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 HIGD1BQ9P298 99 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 TRAV17A0A0B4J275 112 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 VSTM2AQ8TAG5 236 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 hADV38S2A0JD32 116 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 CXCL1P09341 107 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 GPR146Q96CH1 333 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 OR2T8A6NH00 312 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 IGHG4P01861 327 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 PRSS37A4D1T9 235 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 TMEM229AB2RXF0 380 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 PRRG2O14669 202 aa2.99□□□□□ -1.93
SYNE1-201ENST00000341594 SCTP09683 121 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms