RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 XKRY2A2RUG3 117 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 GPX4P36969 197 aaPredicted RBP12.07□□□□□ -0.48
TPM3-208ENST00000341485 RPL15P61313 204 aaKnown RBP12.07□□□□□ -0.48
TPM3-208ENST00000341485 SSBP2P81877 361 aaPredicted RBP12.07□□□□□ -0.48
TPM3-208ENST00000341485 FOXL1Q12952 345 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 PRSS8Q16651 343 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 ZNF841Q6ZN19 808 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 ACY3Q96HD9 319 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 RITA1Q96K30 269 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 PACRGQ96M98 296 aaPredicted RBP12.07□□□□□ -0.48
TPM3-208ENST00000341485 TPSG1Q9NRR2 321 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 A0A0U1RQK1 487 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 ZNF320A2RRD8 509 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 C9JCJ5 164 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 MRGPRG-AS1Q2M3A8 158 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 OR10G8Q8NGN5 311 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 SGMS2Q8NHU3 365 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 C19orf24Q9BVV8 132 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 FNDC4Q9H6D8 234 aaPredicted RBP12.07□□□□□ -0.48
TPM3-208ENST00000341485 DMRT1Q9Y5R6 373 aa12.07□□□□□ -0.48
TPM3-208ENST00000341485 PSMB11A5LHX3 300 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 SLC25A17O43808 307 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 HLA-DRB5Q30154 266 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 PQLC2Q6ZP29 291 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 TMEM133Q9H2Q1 129 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 IGHV3-72A0A0B4J1Y9 119 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 OR7C2O60412 319 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 AMBPP02760 352 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 DLX1P56177 255 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 EAF1Q96JC9 268 aaPredicted RBP12.06□□□□□ -0.48
TPM3-208ENST00000341485 CCL19Q99731 98 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 SLC25A33Q9BSK2 321 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 LY96Q9Y6Y9 160 aa12.06□□□□□ -0.48
TPM3-208ENST00000341485 OR10J4P0C629 311 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 C8orf88P0DMB2 117 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 CRYBB3P26998 211 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 MC5RP33032 325 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 PDLIM4P50479 330 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 TAS2R45P59539 299 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 SRSF1Q07955 248 aaKnown RBP eCLIP12.05□□□□□ -0.482e-7■□□□□ 8.7
TPM3-208ENST00000341485 VMA21Q3ZAQ7 101 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 MORN5Q5VZ52 161 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 RNASEH2CQ8TDP1 164 aaKnown RBP12.05□□□□□ -0.48
TPM3-208ENST00000341485 BTF3L4Q96K17 158 aa12.05□□□□□ -0.48
TPM3-208ENST00000341485 PPIAL4CA0A0B4J2A2 164 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 A1L4Q6 167 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 GGTLC3B5MD39 225 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 OVOL3O00110 214 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 PPIAL4GP0DN37 164 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 COX6B1P14854 86 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 FAM167A-AS1Q96KT0 104 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 SLC25A2Q9BXI2 301 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 TRAPPC1Q9Y5R8 145 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 CFAP46Q8IYW2 2715 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 TRAV5A0A0B4J249 113 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 A0A1W2PPI3 338 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 SLC17A3O00476 420 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 ENSAO43768 121 aaKnown RBP12.04□□□□□ -0.48
TPM3-208ENST00000341485 RD3LP0DJH9 198 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 PRB3Q04118 309 aaPredicted RBP12.04□□□□□ -0.48
TPM3-208ENST00000341485 NPIPB3Q92617 1050 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 PFDN5Q99471 154 aa12.04□□□□□ -0.48
TPM3-208ENST00000341485 MRPL32Q9BYC8 188 aaKnown RBP12.04□□□□□ -0.48
TPM3-208ENST00000341485 MRPL36Q9P0J6 103 aaKnown RBP12.04□□□□□ -0.48
TPM3-208ENST00000341485 NAV3Q8IVL0 2385 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 IGKV1D-37A0A075B6S9 117 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 IGHV2-26A0A0B4J1V2 119 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 IGHV3-48P01763 117 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 REG1AP05451 166 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 HIST1H1BP16401 226 aaKnown RBP12.03□□□□□ -0.48
TPM3-208ENST00000341485 SUB1P53999 127 aaKnown RBP eCLIP12.03□□□□□ -0.484e-7■□□□□ 9
TPM3-208ENST00000341485 CENPWQ5EE01 88 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 DNLZQ5SXM8 178 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 SSBP3Q9BWW4 388 aaPredicted RBP12.03□□□□□ -0.48
TPM3-208ENST00000341485 PRDM13Q9H4Q3 707 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 IL36BQ9NZH7 164 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 PLXNB1O43157 2135 aa12.03□□□□□ -0.48
TPM3-208ENST00000341485 HELTA6NFD8 242 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 LGALS7P47929 136 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 CNN1P51911 297 aaKnown RBP12.02□□□□□ -0.48
TPM3-208ENST00000341485 OR5I1Q13606 314 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 THAP8Q8NA92 274 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 C8orf46Q8TAG6 207 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 DNAJC4Q9NNZ3 241 aa12.02□□□□□ -0.48
TPM3-208ENST00000341485 LIPFP07098 398 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 CNTFRP26992 372 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 GNG4P50150 75 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 ZNF90Q03938 601 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 RNF2Q99496 336 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 ONECUT1Q9UBC0 465 aa12.02□□□□□ -0.49
TPM3-208ENST00000341485 TRAV20A0A0B4J274 112 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 A0A1W2PRE2 83 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 TCRBV4S1A1TA0A5B7 111 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 IGLC7A0M8Q6 106 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 IGLV1-47P01700 117 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 SUMO1P63165 101 aaKnown RBP12.01□□□□□ -0.49
TPM3-208ENST00000341485 PATE2Q6UY27 113 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 TEX45Q8NA69 505 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 TNFRSF14Q92956 283 aa12.01□□□□□ -0.49
TPM3-208ENST00000341485 V9GYV3 84 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms