RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 IGKV3-7A0A075B6H7 116 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 TMEM250H0YL14 139 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 PDE6DO43924 150 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 COMPP49747 757 aaPredicted RBP9.83□□□□□ -0.84
USP1-201ENST00000339950 AARDQ4LEZ3 155 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 C11orf53Q8IXP5 236 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 C2orf88Q9BSF0 95 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 C11orf1Q9H5F2 150 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 MKRN2OSH3BPM6 223 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 TAS2R45P59539 299 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 NRN1LQ496H8 165 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 S100A7AQ86SG5 101 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 SLC45A2Q9UMX9 530 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 WDR83OSQ9Y284 106 aa9.83□□□□□ -0.84
USP1-201ENST00000339950 PGPA6NDG6 321 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 SAA1P0DJI8 122 aaPredicted RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 LCN12Q6JVE5 192 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 OR5R1Q8NH85 324 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 FAM222BQ8WU58 562 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 MBNL3Q9NUK0 354 aaKnown RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 UQCR10Q9UDW1 63 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 TRAV1-1A0A0B4J248 108 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 AHRRA9YTQ3 701 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 PFN1P07737 140 aaKnown RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 IBA57Q5T440 356 aaKnown RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 C22orf34Q6ZV56 151 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 TMEM106BQ9NUM4 274 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 FAM90A26D6RGX4 464 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 GFRA3O60609 400 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 FAM87AP0C7U9 286 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 NHLH1Q02575 133 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 PRR30Q53SZ7 412 aaPredicted RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 LRRC10Q5BKY1 277 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 Q6ZSR3 168 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 AGMATQ9BSE5 352 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 MRPS18CQ9Y3D5 142 aaKnown RBP9.82□□□□□ -0.84
USP1-201ENST00000339950 TNFRSF1AP19438 455 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 BRWD1-AS2P59051 145 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 ERVK11-1P61568 191 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 TDRG1Q3Y452 100 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 LDLRAD2Q5SZI1 272 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 NEU1Q99519 415 aa9.82□□□□□ -0.84
USP1-201ENST00000339950 DPRXA6NFQ7 191 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 PROP1O75360 226 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 BSPH1Q075Z2 132 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 NAA38Q9BRA0 125 aaKnown RBP9.81□□□□□ -0.84
USP1-201ENST00000339950 AKAP13Q12802 2813 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 IGHV3-49A0A0A0MS15 119 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 C16orf97H3BN30 126 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.81□□□□□ -0.84
USP1-201ENST00000339950 OR5AL1P0C617 328 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 ARF6P62330 175 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 RPL8P62917 257 aaKnown RBP9.81□□□□□ -0.84
USP1-201ENST00000339950 RELBQ01201 579 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 KLF17Q5JT82 389 aaPredicted RBP9.81□□□□□ -0.84
USP1-201ENST00000339950 ASCL3Q9NQ33 180 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 SS18L1O75177 396 aaPredicted RBP9.81□□□□□ -0.84
USP1-201ENST00000339950 C10orf113Q5VZT2 155 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 LYPD2Q6UXB3 125 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 Q6ZS49 121 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 ABHD17AQ96GS6 310 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 PAXXQ9BUH6 204 aa9.81□□□□□ -0.84
USP1-201ENST00000339950 ATG2AQ2TAZ0 1938 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 TNRC6AQ8NDV7 1962 aaKnown RBP9.8□□□□□ -0.84
USP1-201ENST00000339950 PPIAL4EA0A075B759 164 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 TRAV8-1A0A0A6YYK1 113 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 PPIAL4DF5H284 164 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 PPIAL4FP0DN26 164 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 PAFAH1B2P68402 229 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 TCF24Q7RTU0 167 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 PGLYRP4Q96LB8 373 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 GNB4Q9HAV0 340 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 IL19Q9UHD0 177 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 KBTBD11-OT1A0A1B0GTJ5 212 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 CGB1A6NKQ9 187 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 SRRM4A7MD48 611 aaKnown RBP9.8□□□□□ -0.84
USP1-201ENST00000339950 NUDT3O95989 172 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 IGHV1-46P01743 117 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 APCSP02743 223 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 OR4B1Q8NGF8 309 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 Q8TCH9 128 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 TMEM170AQ8WVE7 144 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 ZNF714Q96N38 554 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 MIEN1Q9BRT3 115 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 ALKBH7Q9BT30 221 aaPredicted RBP9.8□□□□□ -0.84
USP1-201ENST00000339950 IDI2-AS1Q9NZ38 188 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 JPT1Q9UK76 154 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 LAMTOR2Q9Y2Q5 125 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 INSIG2Q9Y5U4 225 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 TRBV20OR9-2A0A075B6H5 130 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 LOC389332A0A1B0GUA5 103 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 SRRM5B3KS81 715 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 CD40P25942 277 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 PRNTQ86SH4 94 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 CORO2AQ92828 525 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 RPEQ96AT9 228 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 IFI27L2Q9H2X8 130 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 FBXL15Q9H469 300 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 KCNIP2Q9NS61 270 aa9.8□□□□□ -0.84
USP1-201ENST00000339950 CDKN1AP38936 164 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms