RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 S4R3C0 116 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 ZFHX3Q15911 3703 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 FLNAP21333 2647 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 ZNF469Q96JG9 3925 aaPredicted RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 IGKV1D-37A0A075B6S9 117 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 C9JQL5 133 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 ATP6V0E1O15342 81 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 TSPAN15O95858 294 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 MT-CO2P00403 227 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 IGHV4-59P01825 116 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 HLA-DRB1P01911 266 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 CTRB1P17538 263 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 OR10J1P30954 320 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 RND2P52198 227 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 FGF8P55075 233 aaPredicted RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 ATP5IP56385 69 aaPredicted RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 SERF2P84101 59 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 CYB5R2Q6BCY4 276 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 CTRB2Q6GPI1 263 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 FAM122CQ6P4D5 195 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 TEPPQ6URK8 271 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 TMEM144Q7Z5S9 345 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 STPG3Q8N7X2 389 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 BPIFCQ8NFQ6 507 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 OR5T1Q8NG75 326 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 OR10G4Q8NGN3 311 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 OR10G9Q8NGN4 311 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 OR10G7Q8NGN6 311 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 RNASEH2CQ8TDP1 164 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 LINC00052Q96N35 136 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 RBM14Q96PK6 669 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 TNFRSF19Q9NS68 423 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 C1RLQ9NZP8 487 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 PXMP4Q9Y6I8 212 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 ACANP16112 2415 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 SONP18583 2426 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 TEX15Q9BXT5 2789 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 NOTCH2Q04721 2471 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 A6NDX4 124 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 FNDC10F2Z333 226 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 C17orf112F2Z3M2 114 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 G3V318 75 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 MPDU1O75352 247 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 CRYGCP07315 174 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 LINC00869P0C866 280 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 S100A1P23297 94 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 GPX4P36969 197 aaPredicted RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 B2MP61769 119 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 ZNF90Q03938 601 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 ECSCRQ19T08 205 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 Q6ZS46 218 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 MRPL41Q8IXM3 137 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 EIF4E3Q8N5X7 224 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 CACNG8Q8WXS5 425 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 SLC35E1Q96K37 410 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 ZNF48Q96MX3 618 aaPredicted RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 FOXC2Q99958 501 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 SRSF8Q9BRL6 282 aaKnown RBP3.26□□□□□ -1.89
MCF2-201ENST00000338585 SCRT1Q9BWW7 348 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 LINC00527Q9UJ94 153 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 SLC45A2Q9UMX9 530 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 MOB4Q9Y3A3 225 aa3.26□□□□□ -1.89
MCF2-201ENST00000338585 I3L2K1 104 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 K7EIM0 57 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 M6PRP20645 277 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 BLCAPP62952 87 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 KRTAP1-1Q07627 177 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 C9orf152Q5JTZ5 239 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 SPATA31B1PQ5VZV4 182 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 DPPA3Q6W0C5 159 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 IL34Q6ZMJ4 242 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 NANPQ8TBE9 248 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 RAB24Q969Q5 203 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 NARS2Q96I59 477 aaKnown RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 FANCD2OSQ96PS1 177 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 SLC39A9Q9NUM3 307 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 MYO9AB2RTY4 2548 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 IGLV11-55A0A075B6I3 123 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 RAB19A4D1S5 217 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 MAP1LC3B2A6NCE7 125 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 ZFP92A6NM28 416 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 NPIPB5A8MRT5 1133 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 SOX15O60248 233 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 NDUFB8O95169 186 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 IGHV3-23P01764 117 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 ADCYAP1P18509 176 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 IER3P46695 156 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 RPL29P47914 159 aaKnown RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 RAB31Q13636 194 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 HAGHQ16775 308 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 ACOT6Q3I5F7 207 aaPredicted RBP3.25□□□□□ -1.89
MCF2-201ENST00000338585 UNQ5815/PRO19632Q6UWF5 114 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 CYP2G1PQ6ZSU1 146 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 TTC9CQ8N5M4 171 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 SGMS2Q8NHU3 365 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 MBD3L1Q8WWY6 194 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 FAM210AQ96ND0 272 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 RARRES2Q99969 163 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 MAP1LC3BQ9GZQ8 125 aa3.25□□□□□ -1.89
MCF2-201ENST00000338585 TMPRSS5Q9H3S3 457 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 196 ms