RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 DIRC2Q96SL1 478 aa7.12□□□□□ -1.27
SNCA-201ENST00000336904 SLC25A33Q9BSK2 321 aa7.12□□□□□ -1.27
SNCA-201ENST00000336904 LPAR2Q9HBW0 351 aa7.12□□□□□ -1.27
SNCA-201ENST00000336904 GSN-AS1Q9NRJ2 163 aa7.12□□□□□ -1.27
SNCA-201ENST00000336904 SSUH2Q9Y2M2 353 aa7.12□□□□□ -1.27
SNCA-201ENST00000336904 FABP1P07148 127 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 S100A2P29034 98 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 MAS1LP35410 378 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 ERHP84090 104 aaKnown RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 CD69Q07108 199 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 Q71RC1 249 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 HIST3H2BBQ8N257 126 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 OR5AU1Q8NGC0 362 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 OR2T10Q8NGZ9 312 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 PRO1933Q9H354 126 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 LINC00574Q9H8X3 128 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 BET1LQ9NYM9 111 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 INSIG2Q9Y5U4 225 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 CUBNO60494 3623 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 IGSF10Q6WRI0 2623 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 MDFIC2A0A1B0GVS7 189 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 XKRY2A2RUG3 117 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 CXorf65A6NEN9 183 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 B9A039 149 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 ITGB1BP1O14713 200 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 MPDU1O75352 247 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 CBLN1P23435 193 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 CDX1P47902 265 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 MRGPRG-AS1Q2M3A8 158 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 PRR27Q6MZM9 219 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 ZNF841Q6ZN19 808 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 OR1B1Q8NGR6 318 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 OSR1Q8TAX0 266 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 SFRP2Q96HF1 295 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 SSBP3Q9BWW4 388 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 SEBOXQ9HB31 216 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 KCNIP2Q9NS61 270 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 GAR1Q9NY12 217 aaKnown RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 IGHV3OR16-8A0A075B7F1 116 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 RPL29P47914 159 aaKnown RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 UBE2L3P68036 154 aaKnown RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 HES1Q14469 280 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 CENPWQ5EE01 88 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 TMEM144Q7Z5S9 345 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 SLC35E1Q96K37 410 aa7.11□□□□□ -1.27
SNCA-201ENST00000336904 USP9XQ93008 2570 aaPredicted RBP7.11□□□□□ -1.27
SNCA-201ENST00000336904 TRAV20A0A0B4J274 112 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 PDE6DO43924 150 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 LY86O95711 162 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 RANP62826 216 aaKnown RBP7.1□□□□□ -1.27
SNCA-201ENST00000336904 POU2AF1Q16633 256 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 TMEM177Q53S58 311 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 OR5B3Q8NH48 314 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 RPEQ96AT9 228 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 ZNF355PQ9NSJ1 428 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 SERTAD4Q9NUC0 356 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 FAM208BQ5VWN6 2430 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 IGHV1-3A0A0C4DH29 117 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 PHOX2AO14813 284 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 TIMM23O14925 209 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 COX7A2P2O60397 106 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 IGHV3-23P01764 117 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 ERVFC1-1P60608 527 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 PATE2Q6UY27 113 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 ZNF257Q9Y2Q1 563 aa7.1□□□□□ -1.27
SNCA-201ENST00000336904 TRBV24-1A0A075B6N3 115 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 DLL1O00548 723 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 NUPR1O60356 82 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 USF1P22415 310 aaPredicted RBP7.09□□□□□ -1.27
SNCA-201ENST00000336904 SSX2Q16385 188 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 KIAA1644Q3SXP7 199 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 C2orf83Q53S99 150 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 TMEM256Q8N2U0 113 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 TMEM186Q96B77 213 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 SLC25A2Q9BXI2 301 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 IGKV1D-37A0A075B6S9 117 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 IGHV3-35A0A0C4DH35 117 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 SH2D7A6NKC9 451 aaPredicted RBP7.09□□□□□ -1.27
SNCA-201ENST00000336904 F2Z2F3 143 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 SMIM6P0DI80 62 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 VMA21Q3ZAQ7 101 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 TMEM167AQ8TBQ9 72 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 RAB1CQ92928 201 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 PACRGQ96M98 296 aaPredicted RBP7.09□□□□□ -1.27
SNCA-201ENST00000336904 HIST1H2BLQ99880 126 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 CTDSP1Q9GZU7 261 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 NCOR1P1Q9H4R4 102 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 UBTD1Q9HAC8 227 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 DMRT1Q9Y5R6 373 aa7.09□□□□□ -1.27
SNCA-201ENST00000336904 ZANQ9Y493 2812 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 IGLC7A0M8Q6 106 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 BUB1B-PAK6H3BSN5 160 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 CNIH1O95406 144 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 S100A8P05109 93 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 KLRB1Q12918 225 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 MMDQ15546 238 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 TEX38Q6PEX7 206 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 UNQ6494/PRO21346Q6UXR6 183 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 PDPNQ86YL7 162 aa7.09□□□□□ -1.28
SNCA-201ENST00000336904 OR8I2Q8N0Y5 310 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms