RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PLXNB3Q9ULL4 1909 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 DUSP15Q9H1R2 295 aaPredicted RBP6.68□□□□□ -1.34
CIITA-201ENST00000324288 VCX2Q9H322 139 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 A8MWV9 139 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 TMEM170AQ8WVE7 144 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 ADAMTSL3P82987 1691 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 TNFRSF6BO95407 300 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 ESDP10768 282 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 C1QL2Q7Z5L3 287 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 RTN4RL2Q86UN3 420 aa6.68□□□□□ -1.34
CIITA-201ENST00000324288 PRR33A8MZF0 331 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BKO60814 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 TNFSF13O75888 250 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 CD160O95971 181 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BJP06899 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 SPINK8P0C7L1 97 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BOP23527 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BBP33778 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 CA7P43166 264 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BDP58876 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BCP62807 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST2H2BEQ16778 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.67□□□□□ -1.34
CIITA-201ENST00000324288 OR4X2Q8NGF9 303 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BHQ93079 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BNQ99877 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BMQ99879 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 IFI27L2Q9H2X8 130 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 FRMPD3Q5JV73 1810 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 H3BRM9 83 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 MC5RP33032 325 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 CD300EQ496F6 205 aaPredicted RBP6.67□□□□□ -1.34
CIITA-201ENST00000324288 ZP4Q12836 540 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 FAM89BQ8N5H3 189 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 C11orf44Q8N8P7 122 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 DEPPQ9NTK1 212 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 CXCL1P09341 107 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 TIMM23BQ5SRD1 257 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 SLC25A47Q6Q0C1 308 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 A0A1B0GW15 77 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 IGKV1D-33P01593 117 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 IGKV1-33P01594 117 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 ORMDL3Q8N138 153 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 Q9H3A6 140 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 SHISA3A0PJX4 238 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 C17orf98A8MV24 154 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 PCOLCEQ15113 449 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 TLN1Q9Y490 2541 aaKnown RBP6.67□□□□□ -1.34
CIITA-201ENST00000324288 LHX2P50458 406 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 ZNF479Q96JC4 524 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 HIST1H2BLQ99880 126 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 FBXL7Q9UJT9 491 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 VENTXO95231 258 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 CLEC19AQ6UXS0 136 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 MRPL20Q9BYC9 149 aaKnown RBP6.67□□□□□ -1.34
CIITA-201ENST00000324288 SEMA5BQ9P283 1151 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 TRGV2A0A075B6R0 118 aa6.67□□□□□ -1.34
CIITA-201ENST00000324288 IGLV1-36A0A0B4J1U3 117 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 ZNF415Q09FC8 603 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 C1orf100Q5SVJ3 147 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 BMPERQ8N8U9 685 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SLC25A28Q96A46 364 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SFXN3Q9BWM7 321 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 UBE2CO00762 179 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 CD24P25063 80 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 ASIPP42127 132 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SRSF6Q13247 344 aaKnown RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 UNQ9370/PRO34162Q6UXP9 181 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 RTBDNQ9BSG5 229 aaPredicted RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 FBXL15Q9H469 300 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 DSCAMO60469 2012 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 IGHV1-69-2A0A0G2JMI3 117 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 C1orf174Q8IYL3 243 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SMRP1Q8NCR6 262 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SCRT1Q9BWW7 348 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 ANAPC1Q9H1A4 1944 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 PRB1P04280 392 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 MRPL32Q9BYC8 188 aaKnown RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 SDF2L1Q9HCN8 221 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 NCR2O95944 276 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 LINC00158P58513 81 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 TFF1P04155 84 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SSBP2P81877 361 aaPredicted RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 OR9G1Q8NH87 305 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 SLC25A15Q9Y619 301 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 KBTBD11-OT1A0A1B0GTJ5 212 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 TNFRSF14Q92956 283 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 NUTF2P61970 127 aaKnown RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 TMEM42Q69YG0 159 aa6.66□□□□□ -1.34
CIITA-201ENST00000324288 ZNF501Q96CX3 271 aaPredicted RBP6.66□□□□□ -1.34
CIITA-201ENST00000324288 HIVEP2P31629 2446 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 CELA3AP09093 270 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 RNF182Q8N6D2 247 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 SCARF2Q96GP6 870 aaPredicted RBP6.65□□□□□ -1.34
CIITA-201ENST00000324288 RFNGQ9Y644 331 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 FN1P02751 2386 aaKnown RBP6.65□□□□□ -1.34
CIITA-201ENST00000324288 A0A1W2PQF6 199 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 NAPSAO96009 420 aa6.65□□□□□ -1.34
CIITA-201ENST00000324288 C3orf36Q3SXR2 165 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms