RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 TM2D3Q9BRN9 247 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 RETNQ9HD89 108 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 UBQLN2Q9UHD9 624 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 TMEM56-RWDD3S4R434 201 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 C8orf88P0DMB2 117 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 TRIQKQ629K1 86 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 LAMTOR1Q6IAA8 161 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 LYZL2Q7Z4W2 148 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 LGI3Q8N145 548 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 GALNT14Q96FL9 552 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 TRAV25A0A0B4J276 109 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 C15orf62A8K5M9 175 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 HTR2BP41595 481 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 TFPI2P48307 235 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 SUPT4H1P63272 117 aaKnown RBP12.05□□□□□ -0.48
HDDC2-201ENST00000318787 MLANAQ16655 118 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 TMEM116Q8NCL8 245 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 IL22RA2Q969J5 263 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 FAM110AQ9BQ89 295 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 HIPK2Q9H2X6 1198 aa12.05□□□□□ -0.48
HDDC2-201ENST00000318787 TRAV14DV4A0A0A6YYC5 116 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 RBMY1BA6NDE4 496 aaKnown RBP12.04□□□□□ -0.48
HDDC2-201ENST00000318787 RBMY1EA6NEQ0 496 aaKnown RBP12.04□□□□□ -0.48
HDDC2-201ENST00000318787 INS-IGF2F8WCM5 200 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 K7EMT4 169 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 RBMY1DP0C7P1 496 aaKnown RBP12.04□□□□□ -0.48
HDDC2-201ENST00000318787 SLC24A4Q8NFF2 622 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 OR52E5Q8NH55 327 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 OR1S1Q8NH92 325 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 GINS3Q9BRX5 216 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 RHPN1-AS1Q9BWJ2 59 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 SRRQ9GZT4 340 aa12.04□□□□□ -0.48
HDDC2-201ENST00000318787 FNDC4Q9H6D8 234 aaPredicted RBP12.04□□□□□ -0.48
HDDC2-201ENST00000318787 PUS1Q9Y606 427 aaKnown RBP eCLIP12.04□□□□□ -0.48
HDDC2-201ENST00000318787 IGHV3-66A0A0C4DH42 116 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 IGHV7-4-1A0A0J9YVY3 117 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 SCGB2A1O75556 95 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 IFNA10P01566 189 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 FCGR2BP31994 310 aaPredicted RBP12.03□□□□□ -0.48
HDDC2-201ENST00000318787 CCR6P51684 374 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 SRPXP78539 464 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 SMCO1Q147U7 214 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 ZNF600Q6ZNG1 722 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 RNF2Q99496 336 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 SPAG8Q99932 426 aaPredicted RBP12.03□□□□□ -0.48
HDDC2-201ENST00000318787 MRPL36Q9P0J6 103 aaKnown RBP12.03□□□□□ -0.48
HDDC2-201ENST00000318787 SMPXQ9UHP9 88 aa12.03□□□□□ -0.48
HDDC2-201ENST00000318787 A0A0B4J2A0 478 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 RPS10-NUDT3A0A1W2PQS6 291 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 TSPAN4O14817 238 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 TMEM50AO95807 157 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 TMEM128Q5BJH2 165 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 TOMM20LQ6UXN7 152 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 CENPSQ8N2Z9 138 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 GBGT1Q8N5D6 347 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 SLC25A21Q9BQT8 299 aaPredicted RBP12.02□□□□□ -0.49
HDDC2-201ENST00000318787 SHPKQ9UHJ6 478 aa12.02□□□□□ -0.49
HDDC2-201ENST00000318787 OR4C46A6NHA9 309 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 CHEK1O14757 476 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 CLN5O75503 358 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 NPY1RP25929 384 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 RND2P52198 227 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 RPL11P62913 178 aaKnown RBP12.01□□□□□ -0.49
HDDC2-201ENST00000318787 TNFRSF9Q07011 255 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 BAK1Q16611 211 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 TIGITQ495A1 244 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 MUC7Q8TAX7 377 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 DTD1Q8TEA8 209 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 ZNF414Q96IQ9 312 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 OR10C1Q96KK4 312 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 RBKSQ9H477 322 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 PAIP2BQ9ULR5 123 aaKnown RBP12.01□□□□□ -0.49
HDDC2-201ENST00000318787 STAB2Q8WWQ8 2551 aa12.01□□□□□ -0.49
HDDC2-201ENST00000318787 A0A1B0GU03 582 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 PPP1R1AQ13522 171 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 RBMS2Q15434 407 aaKnown RBP12□□□□□ -0.49
HDDC2-201ENST00000318787 BSXQ3C1V8 233 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 AARDQ4LEZ3 155 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 C2orf83Q53S99 150 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 NMSQ5H8A3 153 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 WFDC3Q8IUB2 231 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 ST8SIA2Q92186 375 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 ACY3Q96HD9 319 aa12□□□□□ -0.49
HDDC2-201ENST00000318787 LOC102724200A0A096LPH7 203 aaPredicted RBP11.99□□□□□ -0.49
HDDC2-201ENST00000318787 APOHP02749 345 aaPredicted RBP11.99□□□□□ -0.49
HDDC2-201ENST00000318787 HOXB5P09067 269 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 BMI1P35226 326 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 PVRIGQ6DKI7 326 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 ZFAND6Q6FIF0 208 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 TCF24Q7RTU0 167 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 OR4X1Q8NH49 305 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 DEDD2Q8WXF8 326 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 CITED4Q96RK1 184 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 GGTLC1Q9BX51 225 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 ZFAND3Q9H8U3 227 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 CACFD1Q9UGQ2 172 aa11.99□□□□□ -0.49
HDDC2-201ENST00000318787 RYR3Q15413 4870 aa11.98□□□□□ -0.49
HDDC2-201ENST00000318787 PIGBOS1A0A0B4J2F0 54 aa11.98□□□□□ -0.49
HDDC2-201ENST00000318787 C3orf84H3BNL1 204 aa11.98□□□□□ -0.49
HDDC2-201ENST00000318787 SFT2D2O95562 160 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms