RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HIPK2Q9H2X6 1198 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 FNDC4Q9H6D8 234 aaPredicted RBP12.18□□□□□ -0.46
LSM1-201ENST00000311351 EDA2RQ9HAV5 297 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.18□□□□□ -0.46
LSM1-201ENST00000311351 TMEM56-RWDD3S4R434 201 aa12.18□□□□□ -0.46
LSM1-201ENST00000311351 IGHV3OR16-13A0A075B7E8 117 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 IGHV3-74A0A0B4J1X5 117 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 IGHV7-4-1A0A0J9YVY3 117 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 C3orf84H3BNL1 204 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 TSPAN4O14817 238 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 OPRK1P41145 380 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 SUB1P53999 127 aaKnown RBP eCLIP12.17□□□□□ -0.46
LSM1-201ENST00000311351 ANKRD55Q3KP44 614 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 DUSP18Q8NEJ0 188 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 OR10C1Q96KK4 312 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 RNF2Q99496 336 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 SPAG8Q99932 426 aaPredicted RBP12.17□□□□□ -0.46
LSM1-201ENST00000311351 UBQLN2Q9UHD9 624 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 SMPXQ9UHP9 88 aa12.17□□□□□ -0.46
LSM1-201ENST00000311351 CORTO00230 105 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 NPBWR1P48145 328 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 INPP1P49441 399 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 MLANAQ16655 118 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 TOMM20LQ6UXN7 152 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 TMED4Q7Z7H5 227 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 OR52E5Q8NH55 327 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 IL22RA2Q969J5 263 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 RHPN1-AS1Q9BWJ2 59 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 KCNIP3Q9Y2W7 256 aa12.16□□□□□ -0.46
LSM1-201ENST00000311351 DYNC2H1Q8NCM8 4307 aaKnown RBP12.15□□□□□ -0.46
LSM1-201ENST00000311351 STARD9Q9P2P6 4700 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 CEBPZOSA8MTT3 80 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 CHEK1O14757 476 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 SULT1A3P0DMM9 295 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 SULT1A4P0DMN0 295 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 ODF3L2Q3SX64 289 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 NMSQ5H8A3 153 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 LAMTOR1Q6IAA8 161 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 LYZL2Q7Z4W2 148 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 TMEM116Q8NCL8 245 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 TMEM170AQ8WVE7 144 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 ZFAND3Q9H8U3 227 aa12.15□□□□□ -0.46
LSM1-201ENST00000311351 HEYLQ9NQ87 328 aaPredicted RBP12.15□□□□□ -0.46
LSM1-201ENST00000311351 PUS1Q9Y606 427 aaKnown RBP eCLIP12.15□□□□□ -0.46
LSM1-201ENST00000311351 A0A1B0GU03 582 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 TMEM50AO95807 157 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 HTR2BP41595 481 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 CASC10Q5T4H9 136 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 TRIQKQ629K1 86 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 ZNF600Q6ZNG1 722 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 SLC24A4Q8NFF2 622 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 GGTLC1Q9BX51 225 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 SRRQ9GZT4 340 aa12.14□□□□□ -0.47
LSM1-201ENST00000311351 IGKV3-7A0A075B6H7 116 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 TRAV14DV4A0A0A6YYC5 116 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 A0A0B4J2A0 478 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 PIGBOS1A0A0B4J2F0 54 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 OR4C46A6NHA9 309 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 CLN5O75503 358 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 APOHP02749 345 aaPredicted RBP12.13□□□□□ -0.47
LSM1-201ENST00000311351 TFPI2P48307 235 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 ZFAND6Q6FIF0 208 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 LGI3Q8N145 548 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 ST8SIA2Q92186 375 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 GINS3Q9BRX5 216 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 SHPKQ9UHJ6 478 aa12.13□□□□□ -0.47
LSM1-201ENST00000311351 CSMD3Q7Z407 3707 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 LOC102724200A0A096LPH7 203 aaPredicted RBP12.12□□□□□ -0.47
LSM1-201ENST00000311351 IGHV3-66A0A0C4DH42 116 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 ANXA3P12429 323 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 LYL1P12980 280 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 VAMP1P23763 118 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 TNFRSF9Q07011 255 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 SMCO1Q147U7 214 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 LINC00299Q6ZSB3 139 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 OR4X1Q8NH49 305 aa12.12□□□□□ -0.47
LSM1-201ENST00000311351 SLC25A21Q9BQT8 299 aaPredicted RBP12.12□□□□□ -0.47
LSM1-201ENST00000311351 NAP1L6A6NFF2 107 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 NPY1RP25929 384 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 CCR6P51684 374 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 RND2P52198 227 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 SRPXP78539 464 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 TIGITQ495A1 244 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 FAM90A2PQ658T7 463 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 LILRB2Q8N423 598 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 GBGT1Q8N5D6 347 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 HSPB7Q9UBY9 170 aa12.11□□□□□ -0.47
LSM1-201ENST00000311351 RPS10-NUDT3A0A1W2PQS6 291 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 CENPXA8MT69 81 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 IGKV1-17P01599 117 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 ZNF124Q15973 351 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 BAK1Q16611 211 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 TMEM128Q5BJH2 165 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 PRSS54Q6PEW0 395 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 TCF24Q7RTU0 167 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 RNASEH2CQ8TDP1 164 aaKnown RBP12.1□□□□□ -0.47
LSM1-201ENST00000311351 DTD1Q8TEA8 209 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 RBKSQ9H477 322 aa12.1□□□□□ -0.47
LSM1-201ENST00000311351 VSIRQ9H7M9 311 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms