RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NUDT11Q96G61 164 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 ZNF414Q96IQ9 312 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 UBE2V1Q13404 147 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 NRN1LQ496H8 165 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 MDS2Q8NDY4 140 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 SLC25A10Q9UBX3 287 aaPredicted RBP12.78□□□□□ -0.36
SHH-201ENST00000297261 Q6ZT83 130 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 DPF1Q92782 380 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 FAM90A27PA6NNH2 459 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 IL15RAQ13261 267 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 C2orf83Q53S99 150 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 PPIHO43447 177 aaKnown RBP12.78□□□□□ -0.36
SHH-201ENST00000297261 SPATA31B1PQ5VZV4 182 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 TMEM14EPQ6UXP3 125 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 GP6Q9HCN6 339 aa12.78□□□□□ -0.36
SHH-201ENST00000297261 IGKV3D-15A0A087WSY6 115 aa12.77□□□□□ -0.36
SHH-201ENST00000297261 GPX1P07203 203 aa12.77□□□□□ -0.36
SHH-201ENST00000297261 SMIM13P0DJ93 91 aa12.77□□□□□ -0.36
SHH-201ENST00000297261 TREML4Q6UXN2 200 aa12.77□□□□□ -0.36
SHH-201ENST00000297261 AGMATQ9BSE5 352 aa12.77□□□□□ -0.36
SHH-201ENST00000297261 MRPL32Q9BYC8 188 aaKnown RBP12.77□□□□□ -0.36
SHH-201ENST00000297261 IGKV3-7A0A075B6H7 116 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 STAG3L2P0CL84 134 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 STAG3L3P0CL85 134 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 SPANXN1Q5VSR9 72 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 GCSAMQ8N6F7 178 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 KLK15Q9H2R5 256 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 SEPSECSQ9HD40 501 aaKnown RBP12.77□□□□□ -0.37
SHH-201ENST00000297261 ATRXP46100 2492 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 GNG5P63218 68 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 PSG7Q13046 419 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 FAM201AQ5SY85 155 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 GGTLC1Q9BX51 225 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 IFI27L2Q9H2X8 130 aa12.77□□□□□ -0.37
SHH-201ENST00000297261 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHH-201ENST00000297261 A0A1B0GV72 72 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 OR9G9P0C7N8 305 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 C9orf106Q8NAJ2 232 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 H7C2G1 150 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 PYYP10082 97 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 CYYR1Q96J86 154 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 ARHGAP21Q5T5U3 1957 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 CEP192Q8TEP8 1941 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 TSPOP30536 169 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 LINC00205P59089 165 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 OR10J3Q5JRS4 329 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 BDP1A6H8Y1 2624 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 LILRA1O75019 489 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 IGHV1-2P23083 117 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 FCGR2BP31994 310 aaPredicted RBP12.76□□□□□ -0.37
SHH-201ENST00000297261 ACP7Q6ZNF0 438 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 C20orf144Q9BQM9 153 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 PLA2G2EQ9NZK7 142 aa12.76□□□□□ -0.37
SHH-201ENST00000297261 A0A1B0GUT8 65 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 CELA3BP08861 270 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 DKK1O94907 266 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 TMEM144Q7Z5S9 345 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 ABHD17AQ96GS6 310 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 ZNF497Q6ZNH5 498 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 ZNF714Q96N38 554 aa12.75□□□□□ -0.37
SHH-201ENST00000297261 hDV102S1A0JD36 115 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 MGPP08493 103 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 RNFT1Q5M7Z0 435 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 SAMD13Q5VXD3 122 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 OR2K2Q8NGT1 345 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 OR9G1Q8NH87 305 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 RNF166Q96A37 237 aaPredicted RBP12.74□□□□□ -0.37
SHH-201ENST00000297261 TMUB1Q9BVT8 246 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 RPP21Q9H633 154 aaKnown RBP12.74□□□□□ -0.37
SHH-201ENST00000297261 MUC6Q6W4X9 2439 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 C16orf97H3BN30 126 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 TPTE2P1Q5T6R2 138 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 RNF138Q8WVD3 245 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 GPR82Q96P67 336 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 HS3ST6Q96QI5 342 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 MCRIP2Q9BUT9 160 aaKnown RBP12.74□□□□□ -0.37
SHH-201ENST00000297261 MAP1LC3AQ9H492 121 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 TMEM160Q9NX00 188 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 LRP4O75096 1905 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 PRB4P10163 310 aaPredicted RBP12.74□□□□□ -0.37
SHH-201ENST00000297261 PAX9P55771 341 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 CGB1A6NKQ9 187 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 ZNF726P1Q15940 193 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 PNKDQ8N490 385 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 IDI2-AS1Q9NZ38 188 aa12.74□□□□□ -0.37
SHH-201ENST00000297261 A0A1B0GWB2 263 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 PSG1P11464 419 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 JKAMPQ9P055 326 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 FBXL7Q9UJT9 491 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 ANAPC10Q9UM13 185 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 OTOGLQ3ZCN5 2332 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 IGHV3-35A0A0C4DH35 117 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 IFNL4K9M1U5 179 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 M0R3E3 92 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 TYMSP04818 313 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 DLX1P56177 255 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 HERVK_113P61574 105 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 SMAGPQ0VAQ4 97 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 C20orf204Q6ZNR8 217 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 LYPD6BQ8NI32 183 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms