RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 PHLDA1Q8WV24 401 aaPredicted RBP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 CGAP01215 116 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 SRSF1Q07955 248 aaKnown RBP eCLIP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 LINC00271P0C7V0 271 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 COX11Q9Y6N1 276 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 HBDP02042 147 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 KIR3DL3Q8N743 410 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 TRAV24A0A0B4J272 114 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 SPAARA0A1B0GVQ0 90 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 PRSS53Q2L4Q9 553 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 OTOGLQ3ZCN5 2332 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 M0R381 172 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 UBE2CO00762 179 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 SRSF7Q16629 238 aaKnown RBP eCLIP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 TMEM42Q69YG0 159 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 OR9G4Q8NGQ1 327 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 SAP25Q8TEE9 199 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 SRSF4Q08170 494 aaKnown RBP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 PPP1R27Q86WC6 154 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 NEU4Q8WWR8 484 aaPredicted RBP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 ANAPC13Q9BS18 74 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 LAMTOR2Q9Y2Q5 125 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 F2Z2F3 143 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 NDUFA3O95167 84 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 IFI27P40305 119 aaPredicted RBP6.73□□□□□ -1.33
LIMD1-201ENST00000273317 C1QL4Q86Z23 238 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 PEMTQ9UBM1 199 aa6.73□□□□□ -1.33
LIMD1-201ENST00000273317 TRAV1-1A0A0B4J248 108 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 LOC105371267A0A1B0GV96 52 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 STPG1Q5TH74 334 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 C14orf144Q96I85 54 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 DPM3Q9P2X0 92 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 MRPS18CQ9Y3D5 142 aaKnown RBP6.72□□□□□ -1.33
LIMD1-201ENST00000273317 PLXNB3Q9ULL4 1909 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 TRGV11A0A075B6L2 103 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 F8VVB4 439 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 F8VWA3 439 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 ZNF883P0CG24 379 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 CCL20P78556 96 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 HSD52Q0P140 79 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 TRAV8-4A0A0B4J246 113 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 C12orf77C9JDV5 145 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 APOMO95445 188 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 TGIF1Q15583 401 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 ZNF525Q8N782 197 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 CYSLTR1Q9Y271 337 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 MUC21A0A0G2JKD1 596 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 MUC21A0A140T8X8 626 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 PF4P02776 101 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 MUC21Q5SSG8 566 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 C18orf15Q96N68 181 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 MS4A6AQ9H2W1 248 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 SERF1AO75920 110 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 APOBEC3AP31941 199 aaPredicted RBP6.72□□□□□ -1.33
LIMD1-201ENST00000273317 ZNF585BQ52M93 769 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 FAM166AQ6J272 317 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 OR5AN1Q8NGI8 311 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 HS3ST3B1Q9Y662 390 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 C15orf61A6NNL5 157 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 SPANXA1Q9NS26 97 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 IGFBP2P18065 325 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 LEAP2Q969E1 77 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 IQCF6A8MYZ5 107 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 IGFBP3P17936 291 aaPredicted RBP6.72□□□□□ -1.33
LIMD1-201ENST00000273317 Q5BKY6 102 aa6.72□□□□□ -1.33
LIMD1-201ENST00000273317 C4orf51C9J302 202 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 FOXA2Q9Y261 457 aaPredicted RBP6.71□□□□□ -1.33
LIMD1-201ENST00000273317 A0A0G2JK05 382 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 LOC101059948A0A1B0GTJ6 334 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 CCL1P22362 96 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 TRAV8-2A0A0B4J237 113 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 PAX2Q02962 417 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 SLC25A48Q6ZT89 311 aaKnown RBP6.71□□□□□ -1.33
LIMD1-201ENST00000273317 MEGF9Q9H1U4 602 aa6.71□□□□□ -1.33
LIMD1-201ENST00000273317 CHCHD2Q9Y6H1 151 aaPredicted RBP6.71□□□□□ -1.33
LIMD1-201ENST00000273317 ATXN8Q156A1 80 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 IGHV2OR16-5A0A0B4J2B6 119 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 A0A1W2PRE2 83 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 MALP21145 153 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 ZIC4Q8N9L1 334 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 SIGMAR1Q99720 223 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 NAA38Q9BRA0 125 aaKnown RBP6.71□□□□□ -1.34
LIMD1-201ENST00000273317 MRPL20Q9BYC9 149 aaKnown RBP6.71□□□□□ -1.34
LIMD1-201ENST00000273317 TMEM106BQ9NUM4 274 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 RAMP1O60894 148 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 FOXA3P55318 350 aaPredicted RBP6.71□□□□□ -1.34
LIMD1-201ENST00000273317 TMEM238C9JI98 176 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 ERVK11-1P61568 191 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 PLPPR1Q8TBJ4 325 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 MGST2Q99735 147 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 C17orf98A8MV24 154 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 ZNF497Q6ZNH5 498 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 TMEM144Q7Z5S9 345 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 NR2C2APQ86WQ0 139 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 NPFFR1Q9GZQ6 430 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 TCRBV4S1A1TA0A5B7 111 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 NBR2O15453 112 aa6.71□□□□□ -1.34
LIMD1-201ENST00000273317 FNDC4Q9H6D8 234 aaPredicted RBP6.71□□□□□ -1.34
LIMD1-201ENST00000273317 DSCAML1Q8TD84 2053 aa6.7□□□□□ -1.34
LIMD1-201ENST00000273317 TRBV6-7A0A0A0MS04 114 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms