RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NDUFA3O95167 84 aa13.07□□□□□ -0.32
USP4-201ENST00000265560 AKR1C3P42330 323 aa13.07□□□□□ -0.32
USP4-201ENST00000265560 SLC35E1Q96K37 410 aa13.07□□□□□ -0.32
USP4-201ENST00000265560 RNF5Q99942 180 aa13.07□□□□□ -0.32
USP4-201ENST00000265560 MT-CO2P00403 227 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 CDC34P49427 236 aaPredicted RBP13.06□□□□□ -0.32
USP4-201ENST00000265560 UBE2G2P60604 165 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 TMEM144Q7Z5S9 345 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 BCL6BQ8N143 479 aaPredicted RBP13.06□□□□□ -0.32
USP4-201ENST00000265560 Q8N6K4 173 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 Q8N9W7 124 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 TMA7Q9Y2S6 64 aaKnown RBP13.06□□□□□ -0.32
USP4-201ENST00000265560 A0A1W2PPV4 95 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 IGHV3-23P01764 117 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 BRS3P32247 399 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 ACOT6Q3I5F7 207 aaPredicted RBP13.06□□□□□ -0.32
USP4-201ENST00000265560 SSX3Q99909 188 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 SLC25A16P16260 332 aa13.06□□□□□ -0.32
USP4-201ENST00000265560 ACTR3CQ9C0K3 210 aaPredicted RBP13.06□□□□□ -0.32
USP4-201ENST00000265560 LINC00869P0C866 280 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 ICAM4Q14773 271 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 UHRF2Q96PU4 802 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 F11RQ9Y624 299 aaKnown RBP13.05□□□□□ -0.32
USP4-201ENST00000265560 NUDT19A8MXV4 375 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 CYB5BO43169 146 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 DSCR9P59020 149 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 RAB31Q13636 194 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 PEA15Q15121 130 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 ASPHD1Q5U4P2 390 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 CIARTQ8N365 385 aaPredicted RBP13.05□□□□□ -0.32
USP4-201ENST00000265560 MBD3L1Q8WWY6 194 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 ARPC1AQ92747 370 aa13.05□□□□□ -0.32
USP4-201ENST00000265560 CTXND1A0A1B0GTU2 59 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 MPDU1O75352 247 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 ECSCRQ19T08 205 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 C9orf152Q5JTZ5 239 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 FAM78BQ5VT40 261 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 CYB561D1Q8N8Q1 229 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 WFDC11Q8NEX6 87 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 PBDC1Q9BVG4 233 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 SLC45A2Q9UMX9 530 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 IGHV7-81A0A0B4J1V7 117 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 OOSP1A8MZH6 123 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 HSPB1P04792 205 aaKnown RBP13.04□□□□□ -0.32
USP4-201ENST00000265560 MAS1LP35410 378 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 MORN5Q5VZ52 161 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 TMEM88Q6PEY1 159 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 DPPA3Q6W0C5 159 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 PIFOQ8TCI5 191 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 G3V318 75 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 SMAD7O15105 426 aaKnown RBP13.04□□□□□ -0.32
USP4-201ENST00000265560 SCAF4O95104 1147 aaKnown RBP13.04□□□□□ -0.32
USP4-201ENST00000265560 PAX1P15863 534 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 NPBWR1P48145 328 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 ZNF562Q6V9R5 426 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 MIR17HGQ75NE6 70 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 OR1P1Q8NH06 330 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 TMUB1Q9BVT8 246 aa13.04□□□□□ -0.32
USP4-201ENST00000265560 IGKV1D-37A0A075B6S9 117 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 INS-IGF2F8WCM5 200 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 HBE1P02100 147 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 ARL14EPLP0DKL9 152 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 EBI3Q14213 229 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 LINC01356Q8N9X3 169 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 RNASEH2CQ8TDP1 164 aaKnown RBP13.03□□□□□ -0.32
USP4-201ENST00000265560 RASL11BQ9BPW5 248 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 H3BUX3 64 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 MBP02144 154 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 PRR20EP86478 221 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 PRR20CP86479 221 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 PRR20DP86480 221 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 PRR20BP86481 221 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 PRR20AP86496 221 aa13.03□□□□□ -0.32
USP4-201ENST00000265560 AKAP9Q99996 3911 aa13.02□□□□□ -0.32
USP4-201ENST00000265560 TRAV5A0A0B4J249 113 aa13.02□□□□□ -0.32
USP4-201ENST00000265560 CTRB1P17538 263 aa13.02□□□□□ -0.32
USP4-201ENST00000265560 CTRB2Q6GPI1 263 aa13.02□□□□□ -0.32
USP4-201ENST00000265560 TMEM37Q8WXS4 190 aa13.02□□□□□ -0.32
USP4-201ENST00000265560 PUS1Q9Y606 427 aaKnown RBP eCLIP13.02□□□□□ -0.32
USP4-201ENST00000265560 PAGE4O60829 102 aa13.02□□□□□ -0.33
USP4-201ENST00000265560 EGR2P11161 476 aaPredicted RBP13.02□□□□□ -0.33
USP4-201ENST00000265560 CACNG8Q8WXS5 425 aa13.02□□□□□ -0.33
USP4-201ENST00000265560 GPX4P36969 197 aaPredicted RBP13.02□□□□□ -0.33
USP4-201ENST00000265560 RPL29P47914 159 aaKnown RBP13.02□□□□□ -0.33
USP4-201ENST00000265560 TMEM249Q2WGJ8 235 aa13.02□□□□□ -0.33
USP4-201ENST00000265560 COMMD1Q8N668 190 aa13.02□□□□□ -0.33
USP4-201ENST00000265560 SLC35B3Q9H1N7 401 aa13.02□□□□□ -0.33
USP4-201ENST00000265560 ORM2P19652 201 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 KRTAP1-3Q8IUG1 177 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 SEC11CQ9BY50 192 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 ZNF355PQ9NSJ1 428 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 TRAV1-1A0A0B4J248 108 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 FAM74A7A6NL05 159 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 ATP6V0E1O15342 81 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 BCL2P10415 239 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 FAM74A3Q4VXF1 159 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 CYP2G1PQ6ZSU1 146 aa13.01□□□□□ -0.33
USP4-201ENST00000265560 IGHV3-35A0A0C4DH35 117 aa13□□□□□ -0.33
USP4-201ENST00000265560 LOC102723971A0A1B0GUV8 181 aa13□□□□□ -0.33
USP4-201ENST00000265560 BTBD17A6NE02 478 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms