RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TNFSF4P23510 183 aa10.35□□□□□ -0.75
LIG1-201ENST00000263274 MBNL2Q5VZF2 373 aaKnown RBP10.35□□□□□ -0.75
LIG1-201ENST00000263274 Q6ZN92 141 aa10.35□□□□□ -0.75
LIG1-201ENST00000263274 PLSCR4Q9NRQ2 329 aa10.35□□□□□ -0.75
LIG1-201ENST00000263274 TBL2Q9Y4P3 447 aaKnown RBP10.35□□□□□ -0.75
LIG1-201ENST00000263274 SLC25A15Q9Y619 301 aa10.35□□□□□ -0.75
LIG1-201ENST00000263274 TNFSF13O75888 250 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 HINT1P49773 126 aaPredicted RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 PAFAH1B2P68402 229 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 ERHP84090 104 aaKnown RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 CCL17Q92583 94 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 ZNF355PQ9NSJ1 428 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 LSM4Q9Y4Z0 139 aaKnown RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 IGHG3P01860 377 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 LINC00869P0C866 280 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 SAA1P0DJI8 122 aaPredicted RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 USF1P22415 310 aaPredicted RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 LGALS4P56470 323 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 ASCL5Q7RTU5 278 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 OR10X1Q8NGY0 326 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 RAB9BQ9NP90 201 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 ANKRD11Q6UB99 2663 aaPredicted RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 IGKV1OR2-108A0A075B7D4 117 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 APOA2P02652 100 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 HNRNPA3P51991 378 aaKnown RBP10.34□□□□□ -0.75
LIG1-201ENST00000263274 MFAP2P55001 183 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 C1orf122Q6ZSJ8 110 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 ZADH2Q8N4Q0 377 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 STPG4Q8N801 248 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 TP53TG3Q9ULZ0 132 aa10.34□□□□□ -0.75
LIG1-201ENST00000263274 CACNA1BQ00975 2339 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 TEX50A0A1B0GTY4 177 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 F2RL2O00254 374 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 GOSR1O95249 250 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 YPEL3P61236 119 aaPredicted RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 ZNF474Q6S9Z5 364 aaPredicted RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 C1orf162Q8NEQ5 155 aaPredicted RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 NPIPB3Q92617 1050 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 SPTBN1Q01082 2364 aaKnown RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 ACACBO00763 2458 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 PRSS46E5RG02 174 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 M0QZ24 198 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 GLRXP35754 106 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 GPR6P46095 362 aaPredicted RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 HCP5Q6MZN7 132 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 UNQ5815/PRO19632Q6UWF5 114 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 BORCS7Q96B45 105 aa10.33□□□□□ -0.76
LIG1-201ENST00000263274 MRPL20Q9BYC9 149 aaKnown RBP10.33□□□□□ -0.76
LIG1-201ENST00000263274 GGTLC3B5MD39 225 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 C22orf46C9J442 243 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 ITGB1BP1O14713 200 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 C8orf88P0DMB2 117 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 VAMP3Q15836 100 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 MORN5Q5VZ52 161 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 ADTRPQ96IZ2 230 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 TMEM14BQ9NUH8 114 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 DKK4Q9UBT3 224 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 V9GYV3 84 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 COL12A1Q99715 3063 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 UPK2O00526 184 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 IGLV1-44P01699 117 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 CT45A6P0DMU7 189 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 CT45A5P0DMU8 189 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 CT45A7P0DMV0 189 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 RCHY1Q96PM5 261 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 SSBP4Q9BWG4 385 aaPredicted RBP10.32□□□□□ -0.76
LIG1-201ENST00000263274 NRN1Q9NPD7 142 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 FBXL7Q9UJT9 491 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 FOXA2Q9Y261 457 aaPredicted RBP10.32□□□□□ -0.76
LIG1-201ENST00000263274 TMEM238C9JI98 176 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 GNG5P63218 68 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 SMIM15Q7Z3B0 74 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 FAM168AQ92567 244 aa10.32□□□□□ -0.76
LIG1-201ENST00000263274 TRGV8A0A0C4DH27 118 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 hADV38S2A0JD32 116 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 FAM90A9PA6NNJ1 464 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 HSBP1O75506 76 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 FTH1P19P0C7X4 201 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 SSBP2P81877 361 aaPredicted RBP10.31□□□□□ -0.76
LIG1-201ENST00000263274 WDR73Q6P4I2 378 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 COL6A6A6NMZ7 2263 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 ADGRG4Q8IZF6 3080 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 H0Y8G0 127 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 MOSP00540 346 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 IGHV1-46P01743 117 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 APCSP02743 223 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 AREGP15514 252 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 PRR20EP86478 221 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 PRR20CP86479 221 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 PRR20DP86480 221 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 PRR20BP86481 221 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 PRR20AP86496 221 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 RNASEKQ6P5S7 137 aaKnown RBP10.31□□□□□ -0.76
LIG1-201ENST00000263274 DDB2Q92466 427 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 SLC25A10Q9UBX3 287 aaPredicted RBP10.31□□□□□ -0.76
LIG1-201ENST00000263274 NDUFS8O00217 210 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 DLX1P56177 255 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 TMPRSS3P57727 454 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 UBE2G1P62253 170 aa10.31□□□□□ -0.76
LIG1-201ENST00000263274 RPL8P62917 257 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms