RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 C1orf122Q6ZSJ8 110 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 MBD6Q96DN6 1003 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 RNF2Q99496 336 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 BIN3Q9NQY0 253 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 INSIG2Q9Y5U4 225 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 TGOLN2O43493 480 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 REG1BP48304 166 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 MIC13Q5XKP0 118 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 SLC45A2Q9UMX9 530 aa14.81□□□□□ -0.04
CLN3-263ENST00000637871 CLN5O75503 358 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 VENTXO95231 258 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 PAX1P15863 534 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 RAB5AP20339 215 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 AKR1C3P42330 323 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 SSX2Q16385 188 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 ETFRF1Q6IPR1 90 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 C1QL4Q86Z23 238 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 KRTAP1-3Q8IUG1 177 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 STPG3Q8N7X2 389 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 SMIM7Q9BQ49 75 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 OTOGQ6ZRI0 2925 aa14.8□□□□□ -0.04
CLN3-263ENST00000637871 CEACAM3P40198 252 aa14.79□□□□□ -0.04
CLN3-263ENST00000637871 RPEQ96AT9 228 aa14.79□□□□□ -0.04
CLN3-263ENST00000637871 C1orf159Q96HA4 380 aa14.79□□□□□ -0.04
CLN3-263ENST00000637871 SRSF8Q9BRL6 282 aaKnown RBP14.79□□□□□ -0.04
CLN3-263ENST00000637871 MYO9AB2RTY4 2548 aa14.79□□□□□ -0.04
CLN3-263ENST00000637871 PRRC2AP48634 2157 aaKnown RBP14.78□□□□□ -0.04
CLN3-263ENST00000637871 IGHV1-3A0A0C4DH29 117 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 CLDN34H7C241 214 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 PAGE4O60829 102 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 ACTL6BO94805 426 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 Q5PR19 223 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 OR11H6Q8NGC7 330 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 OR4F5Q8NH21 305 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 YPEL4Q96NS1 127 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 OR4F4Q96R69 305 aa14.78□□□□□ -0.04
CLN3-263ENST00000637871 ZNF430Q9H8G1 570 aaPredicted RBP14.78□□□□□ -0.04
CLN3-263ENST00000637871 TET2Q6N021 2002 aaPredicted RBP14.78□□□□□ -0.04
CLN3-263ENST00000637871 C11orf94C9JXX5 98 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 ENSAO43768 121 aaKnown RBP14.77□□□□□ -0.04
CLN3-263ENST00000637871 CRYGBP07316 175 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 MYOD1P15172 320 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 PAX2Q02962 417 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 GAMTQ14353 236 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 SPNS3Q6ZMD2 512 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 IQCF2Q8IXL9 164 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 KIR3DL3Q8N743 410 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 ZNF114Q8NC26 417 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 TMPRSS5Q9H3S3 457 aa14.77□□□□□ -0.04
CLN3-263ENST00000637871 LOC105371242A0A075B767 164 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 LY6LH3BQJ8 138 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 CORTO00230 105 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 LINC00869P0C866 280 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 RND2P52198 227 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 TAS2R45P59539 299 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 DIAPH2-AS1Q14236 149 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 PRSS8Q16651 343 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 PVRIGQ6DKI7 326 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 SLC16A13Q7RTY0 426 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 FAM24BQ8N5W8 94 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 OR4P4Q8NGL7 312 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 SSBP3Q9BWW4 388 aaPredicted RBP14.77□□□□□ -0.05
CLN3-263ENST00000637871 TMEM167BQ9NRX6 74 aa14.77□□□□□ -0.05
CLN3-263ENST00000637871 ZNF469Q96JG9 3925 aaPredicted RBP14.76□□□□□ -0.05
CLN3-263ENST00000637871 CELSR1Q9NYQ6 3014 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 HMGB3O15347 200 aaKnown RBP14.76□□□□□ -0.05
CLN3-263ENST00000637871 SLC25A17O43808 307 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 OPN1MWP04001 364 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 OPN1MW2P0DN77 364 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 OPN1MW3P0DN78 364 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 PRTN3P24158 256 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 SELENOTP62341 195 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 MOB3BQ86TA1 216 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 LRRC75A-AS1Q8N1F1 130 aa14.76□□□□□ -0.05
CLN3-263ENST00000637871 MRPL32Q9BYC8 188 aaKnown RBP14.76□□□□□ -0.05
CLN3-263ENST00000637871 IGHV4-30-2A0A087WSY4 118 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 OOSP1A8MZH6 123 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 HTR1DP28221 377 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 RPL27AP46776 148 aaKnown RBP14.75□□□□□ -0.05
CLN3-263ENST00000637871 PSG5Q15238 335 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 CLEC12BQ2HXU8 276 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 PQLC2Q6ZP29 291 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 WFDC11Q8NEX6 87 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 GATAD1Q8WUU5 269 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 SSMEM1Q8WWF3 244 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 ISOC2Q96AB3 205 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 ANAPC16Q96DE5 110 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 PARLQ9H300 379 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 TECRQ9NZ01 308 aaKnown RBP14.75□□□□□ -0.05
CLN3-263ENST00000637871 DOK5Q9P104 306 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 DPM3Q9P2X0 92 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 ONECUT1Q9UBC0 465 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 FUT9Q9Y231 359 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 ITPR3Q14573 2671 aa14.75□□□□□ -0.05
CLN3-263ENST00000637871 GCHFRP30047 84 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 GPR6P46095 362 aaPredicted RBP14.74□□□□□ -0.05
CLN3-263ENST00000637871 GCSAMLQ5JQS6 135 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 OR10W1Q8NGF6 305 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 ABHD5Q8WTS1 349 aa14.74□□□□□ -0.05
CLN3-263ENST00000637871 FOXC2Q99958 501 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms