RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 AARDQ4LEZ3 155 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 FAM209BQ5JX69 171 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 NRARPQ7Z6K4 114 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 ZNF114Q8NC26 417 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 MISP3Q96FF7 219 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 B9D2Q9BPU9 175 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 HEYLQ9NQ87 328 aaPredicted RBP13.94□□□□□ -0.18
CLN3-243ENST00000635973 DMRT1Q9Y5R6 373 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 MFSD2BA6NFX1 497 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 TRBV12-3P01733 135 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 TNFRSF9Q07011 255 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 KLK9Q2XQG4 91 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 GGNBP1Q5YKI7 109 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 C11orf87Q6NUJ2 197 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 PLET1Q6UQ28 207 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 SEC22CQ9BRL7 303 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 KLK9Q9UKQ9 250 aa13.93□□□□□ -0.18
CLN3-243ENST00000635973 KMT2CQ8NEZ4 4911 aaKnown RBP13.93□□□□□ -0.18
CLN3-243ENST00000635973 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.92□□□□□ -0.18
CLN3-243ENST00000635973 TRBV7-1A0A0A6YYK4 115 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 INS-IGF2F8WCM5 200 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 ADAP1O75689 374 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 SLC25A6P12236 298 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 MFAP2P55001 183 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 RPEL1Q2QD12 228 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 CLEC19AQ6UXS0 136 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 UXS1Q8NBZ7 420 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 ZNF431Q8TF32 576 aaPredicted RBP13.92□□□□□ -0.18
CLN3-243ENST00000635973 MITD1Q8WV92 249 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 HIPK2Q9H2X6 1198 aa13.92□□□□□ -0.18
CLN3-243ENST00000635973 IGHV3-21A0A0B4J1V1 117 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 DUSP18Q8NEJ0 188 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 VN1R17PQ8TDU5 208 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 DCUN1D4Q92564 292 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 PINX1Q96BK5 328 aaKnown RBP13.91□□□□□ -0.18
CLN3-243ENST00000635973 CCDC140Q96MF4 163 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 HSPB7Q9UBY9 170 aa13.91□□□□□ -0.18
CLN3-243ENST00000635973 PPP5D1E7EU14 171 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 OVOL1O14753 267 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 RNASE2P10153 161 aaKnown RBP13.9□□□□□ -0.18
CLN3-243ENST00000635973 GPR183P32249 361 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 ARL3P36405 182 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 SLC24A4Q8NFF2 622 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 DTD1Q8TEA8 209 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 DLX4Q92988 240 aaPredicted RBP13.9□□□□□ -0.18
CLN3-243ENST00000635973 RBKSQ9H477 322 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 GPN1Q9HCN4 374 aaPredicted RBP13.9□□□□□ -0.18
CLN3-243ENST00000635973 C21orf62Q9NYP8 219 aa13.9□□□□□ -0.18
CLN3-243ENST00000635973 FAM90A26D6RGX4 464 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 INMT-MINDY4F8WBC2 141 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 CORTO00230 105 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 BMPR1BO00238 502 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 MED6O75586 246 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 HTR2BP41595 481 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 Q56UQ5 140 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 C12orf45Q8N5I9 185 aaPredicted RBP13.89□□□□□ -0.19
CLN3-243ENST00000635973 UBAC2Q8NBM4 344 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 ZNF502Q8TBZ5 544 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 PRR25Q96S07 402 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 ZC4H2Q9NQZ6 224 aa13.89□□□□□ -0.19
CLN3-243ENST00000635973 MPTX1A8MV57 137 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 FAM25EA8MYX2 175 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 K7EIM0 57 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 GGCTO75223 188 aaKnown RBP13.88□□□□□ -0.19
CLN3-243ENST00000635973 PITX3O75364 302 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 LY86O95711 162 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 MT-CO2P00403 227 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 IFNA10P01566 189 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 IL5P05113 134 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 CLEC3BP05452 202 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 TATDN3Q17R31 274 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 SCARB1Q8WTV0 552 aa13.88□□□□□ -0.19
CLN3-243ENST00000635973 OR2T8A6NH00 312 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 WRBO00258 174 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 PRAF2O60831 178 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 NHLRC4P0CG21 123 aaPredicted RBP13.87□□□□□ -0.19
CLN3-243ENST00000635973 IAPPP10997 89 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 NPY1RP25929 384 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 OPRK1P41145 380 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 INSL3P51460 131 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 SYNJ2BPP57105 145 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 IAH1Q2TAA2 248 aaPredicted RBP13.87□□□□□ -0.19
CLN3-243ENST00000635973 NOXA1Q86UR1 476 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 WWC2-AS2Q96NR7 200 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 MAGT1Q9H0U3 335 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 PALMDQ9NP74 551 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 COL7A1Q02388 2944 aa13.87□□□□□ -0.19
CLN3-243ENST00000635973 C5orf51A6NDU8 294 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 I3L2K1 104 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 CCSO14618 274 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 SCGB1D2O95969 90 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 IGHV3-48P01763 117 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 NKX2-1P43699 371 aaPredicted RBP13.86□□□□□ -0.19
CLN3-243ENST00000635973 C2orf83Q53S99 150 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 ELOVL1Q9BW60 279 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 GAR1Q9NY12 217 aaKnown RBP13.86□□□□□ -0.19
CLN3-243ENST00000635973 GSKIPQ9P0R6 139 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 ZNF256Q9Y2P7 627 aaPredicted RBP13.86□□□□□ -0.19
CLN3-243ENST00000635973 U3KQ87 197 aa13.86□□□□□ -0.19
CLN3-243ENST00000635973 TGOLN2O43493 480 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms